A mesoscale connectome of the mouse brain

PSTN (Parasubthalamic nucleus) MBA:364 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264696942, an anterograde tracer injected into PSTN of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (25% of the injection in PSTN) labelled axons in COAa (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 264696942

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to EPd (Endopiriform nucleus, dorsal part) MBA:952 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305321177, an anterograde tracer injected into BLA of a Slc32a1-IRES-Cre mouse, the tracer Cre-dependent (37% of the injection in BLA) labelled axons in EPd (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 305321177

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264319363, an anterograde tracer injected into VMH of a Esr1-2A-Cre mouse, the tracer Cre-dependent (29% of the injection in VMH) labelled axons in LA (projection density 0.083).

Allen Mouse Brain Connectivity Atlas, experiment 264319363

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 523705737, an anterograde tracer injected into AHN of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (16% of the injection in AHN) labelled axons in COAp (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 523705737

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NPC (Nucleus of the posterior commissure) MBA:634 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182031296, an anterograde tracer injected into NPC of a Pdzk1ip1-Cre_KD31 mouse, the tracer Cre-dependent (16% of the injection in NPC) labelled axons in MEA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 182031296

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AAA (Anterior amygdalar area) MBA:23 projects to GPi (Globus pallidus, internal segment) MBA:1031 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in GPi (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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CEA (Central amygdalar nucleus) MBA:536 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in LA (projection density 0.054).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 586054741, an anterograde tracer injected into PIL of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (49% of the injection in PIL) labelled axons in LA (projection density 0.111).

Allen Mouse Brain Connectivity Atlas, experiment 586054741

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PAG (Periaqueductal gray) MBA:795 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272829745, an anterograde tracer injected into PAG of a wild-type mouse (48% of the injection in PAG) labelled axons in AAA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 272829745

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CEA (Central amygdalar nucleus) MBA:536 projects to LM (Lateral mammillary nucleus) MBA:210 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in LM (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in AAA (projection density 0.055).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

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TR (Postpiriform transition area) MBA:566 projects to TMv (Tuberomammillary nucleus, ventral part) MBA:1 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126653015, an anterograde tracer injected into TR of a wild-type mouse (99% of the injection in TR) labelled axons in TMv (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 126653015

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PIR (Piriform area) MBA:961 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184259031, an anterograde tracer injected into PIR of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (98% of the injection in PIR) labelled axons in COAa (projection density 0.137).

Allen Mouse Brain Connectivity Atlas, experiment 184259031

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ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127139568, an anterograde tracer injected into ENTm of a wild-type mouse (56% of the injection in ENTm) labelled axons in BMA (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 127139568

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SUM (Supramammillary nucleus) MBA:525 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 581350498, an anterograde tracer injected into SUM of a Nos1-CreERT2 mouse, the tracer Cre-dependent (26% of the injection in SUM) labelled axons in AAA (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 581350498

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MEA (Medial amygdalar nucleus) MBA:403 projects to PMv (Ventral premammillary nucleus) MBA:1004 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in PMv (projection density 0.067).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to GU (Gustatory areas) MBA:1057 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in GU (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176886958, an anterograde tracer injected into VMH of a Esr1-2A-Cre mouse, the tracer Cre-dependent (33% of the injection in VMH) labelled axons in COAp (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 176886958

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CEA (Central amygdalar nucleus) MBA:536 projects to ISN (Inferior salivatory nucleus) MBA:106 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in ISN (projection density 0.068).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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MEA (Medial amygdalar nucleus) MBA:403 projects to MRN (Midbrain reticular nucleus) MBA:128 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in MRN (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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CEA (Central amygdalar nucleus) MBA:536 projects to PO (Posterior complex of the thalamus) MBA:1020 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in PO (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to LPO (Lateral preoptic area) MBA:226 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in LPO (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

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CEA (Central amygdalar nucleus) MBA:536 projects to MDRNd (Medullary reticular nucleus, dorsal part) MBA:1098 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in MDRNd (projection density 0.048).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to BST (Bed nuclei of the stria terminalis) MBA:351 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286303000, an anterograde tracer injected into MEA of a Slc6a3-Cre mouse, the tracer Cre-dependent (97% of the injection in MEA) labelled axons in BST (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 286303000

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PMv (Ventral premammillary nucleus) MBA:1004 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in PMv (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278317239, an anterograde tracer injected into ENTl of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (97% of the injection in ENTl) labelled axons in AAA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 278317239

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TU (Tuberal nucleus) MBA:614 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264320076, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (15% of the injection in TU) labelled axons in LA (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 264320076

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SI (Substantia innominata) MBA:342 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 299245589, an anterograde tracer injected into SI of a Gad2-IRES-Cre mouse, the tracer Cre-dependent (28% of the injection in SI) labelled axons in BA (projection density 0.062).

Allen Mouse Brain Connectivity Atlas, experiment 299245589

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DR (Dorsal nucleus raphe) MBA:872 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114155190, an anterograde tracer injected into DR of a Slc6a4-CreERT2_EZ13 mouse, the tracer Cre-dependent (63% of the injection in DR) labelled axons in AAA (projection density 0.147).

Allen Mouse Brain Connectivity Atlas, experiment 114155190

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MM (Medial mammillary nucleus) MBA:491 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304720034, an anterograde tracer injected into MM of a Nos1-CreERT2 mouse, the tracer Cre-dependent (24% of the injection in MM) labelled axons in IA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 304720034

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 523705737, an anterograde tracer injected into AHN of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (16% of the injection in AHN) labelled axons in AAA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 523705737

Made by an adapter reading a database (allen-connectivity@1.3.0).

AId (Agranular insular area, dorsal part) MBA:104 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 296047806, an anterograde tracer injected into AId of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (46% of the injection in AId) labelled axons in BLA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 296047806

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305124396, an anterograde tracer injected into MEA of a Gad2-IRES-Cre mouse, the tracer Cre-dependent (65% of the injection in MEA) labelled axons in TR (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 305124396

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PIR (Piriform area) MBA:961 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146857301, an anterograde tracer injected into PIR of a wild-type mouse (79% of the injection in PIR) labelled axons in BMA (projection density 0.208).

Allen Mouse Brain Connectivity Atlas, experiment 146857301

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SUT (Supratrigeminal nucleus) MBA:534 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in SUT (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184259031, an anterograde tracer injected into PIR of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (98% of the injection in PIR) labelled axons in IA (projection density 0.098).

Allen Mouse Brain Connectivity Atlas, experiment 184259031

Made by an adapter reading a database (allen-connectivity@1.3.0).

PH (Posterior hypothalamic nucleus) MBA:946 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175374275, an anterograde tracer injected into PH of a wild-type mouse (32% of the injection in PH) labelled axons in BA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 175374275

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RE (Nucleus of reuniens) MBA:181 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 310976160, an anterograde tracer injected into RE of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (35% of the injection in RE) labelled axons in BMA (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 310976160

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304694870, an anterograde tracer injected into MEA of a Nos1-CreERT2 mouse, the tracer Cre-dependent (100% of the injection in MEA) labelled axons in SO (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 304694870

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MEA (Medial amygdalar nucleus) MBA:403 projects to PS (Parastrial nucleus) MBA:1109 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in PS (projection density 0.060).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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CEA (Central amygdalar nucleus) MBA:536 projects to IRN (Intermediate reticular nucleus) MBA:136 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in IRN (projection density 0.052).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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VTA (Ventral tegmental area) MBA:749 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 171021829, an anterograde tracer injected into VTA of a Cck-IRES-Cre mouse, the tracer Cre-dependent (34% of the injection in VTA) labelled axons in AAA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 171021829

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MEA (Medial amygdalar nucleus) MBA:403 projects to ZI (Zona incerta) MBA:797 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in ZI (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SUM (Supramammillary nucleus) MBA:525 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in SUM (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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CEA (Central amygdalar nucleus) MBA:536 projects to MT (Medial terminal nucleus of the accessory optic tract) MBA:58 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in MT (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

CA3 (Field CA3) MBA:463 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127649005, an anterograde tracer injected into CA3 of a wild-type mouse (65% of the injection in CA3) labelled axons in TR (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 127649005

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ENTl (Entorhinal area, lateral part) MBA:918 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272414403, an anterograde tracer injected into ENTl of a wild-type mouse (71% of the injection in ENTl) labelled axons in COAp (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 272414403

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to RE (Nucleus of reuniens) MBA:181 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in RE (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

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PL (Prelimbic area) MBA:972 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263106036, an anterograde tracer injected into PL of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (46% of the injection in PL) labelled axons in BMA (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 263106036

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ILA (Infralimbic area) MBA:44 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 283019341, an anterograde tracer injected into ILA of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (42% of the injection in ILA) labelled axons in COAa (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 283019341

Made by an adapter reading a database (allen-connectivity@1.3.0).