A mesoscale connectome of the mouse brain

MEA (Medial amygdalar nucleus) MBA:403 projects to BAC (Bed nucleus of the anterior commissure) MBA:287 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286303000, an anterograde tracer injected into MEA of a Slc6a3-Cre mouse, the tracer Cre-dependent (97% of the injection in MEA) labelled axons in BAC (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 286303000

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PSTN (Parasubthalamic nucleus) MBA:364 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PSTN (projection density 0.101).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 478095541, an anterograde tracer injected into VMH of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (28% of the injection in VMH) labelled axons in BLA (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 478095541

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to MEPO (Median preoptic nucleus) MBA:452 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114249084, an anterograde tracer injected into COAp of a wild-type mouse (100% of the injection in COAp) labelled axons in MEPO (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 114249084

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CEA (Central amygdalar nucleus) MBA:536 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in BLA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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ILA (Infralimbic area) MBA:44 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157556400, an anterograde tracer injected into ILA of a wild-type mouse (51% of the injection in ILA) labelled axons in AAA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 157556400

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AId (Agranular insular area, dorsal part) MBA:104 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 299783689, an anterograde tracer injected into AId of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (45% of the injection in AId) labelled axons in BMA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 299783689

Made by an adapter reading a database (allen-connectivity@1.3.0).

BST (Bed nuclei of the stria terminalis) MBA:351 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267764292, an anterograde tracer injected into BST of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (62% of the injection in BST) labelled axons in CEA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 267764292

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CEA (Central amygdalar nucleus) MBA:536 projects to ACVII (Accessory facial motor nucleus) MBA:576 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in ACVII (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126116848, an anterograde tracer injected into ENTl of a wild-type mouse (100% of the injection in ENTl) labelled axons in PA (projection density 0.104).

Allen Mouse Brain Connectivity Atlas, experiment 126116848

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to EW (Edinger-Westphal nucleus) MBA:975 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in EW (projection density 0.087).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PST (Preparasubthalamic nucleus) MBA:356 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in PST (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

Made by an adapter reading a database (allen-connectivity@1.3.0).

VTA (Ventral tegmental area) MBA:749 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165975096, an anterograde tracer injected into VTA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (17% of the injection in VTA) labelled axons in CEA (projection density 0.147).

Allen Mouse Brain Connectivity Atlas, experiment 165975096

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184158996, an anterograde tracer injected into PVT of a Calb2-IRES-Cre mouse, the tracer Cre-dependent (42% of the injection in PVT) labelled axons in COAa (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 184158996

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EPd (Endopiriform nucleus, dorsal part) MBA:952 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158321996, an anterograde tracer injected into EPd of a wild-type mouse (37% of the injection in EPd) labelled axons in IA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 158321996

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in PIL (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

Made by an adapter reading a database (allen-connectivity@1.3.0).

VISpor (Postrhinal area) MBA:312782628 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159321806, an anterograde tracer injected into VISpor of a Ntsr1-Cre_GN220 mouse, the tracer Cre-dependent (60% of the injection in VISpor) labelled axons in LA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 159321806

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to ADP (Anterodorsal preoptic nucleus) MBA:72 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in ADP (projection density 0.219).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ARH (Arcuate hypothalamic nucleus) MBA:223 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in ARH (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

Made by an adapter reading a database (allen-connectivity@1.3.0).

AHN (Anterior hypothalamic nucleus) MBA:88 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181057754, an anterograde tracer injected into AHN of a wild-type mouse (24% of the injection in AHN) labelled axons in CEA (projection density 0.126).

Allen Mouse Brain Connectivity Atlas, experiment 181057754

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SNc (Substantia nigra, compact part) MBA:374 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in SNc (projection density 0.060).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

PAA (Piriform-amygdalar area) MBA:788 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 122641078, an anterograde tracer injected into PAA of a wild-type mouse (48% of the injection in PAA) labelled axons in MEA (projection density 0.198).

Allen Mouse Brain Connectivity Atlas, experiment 122641078

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AHN (Anterior hypothalamic nucleus) MBA:88 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in AHN (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to ACB (Nucleus accumbens) MBA:56 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in ACB (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

VTA (Ventral tegmental area) MBA:749 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127798146, an anterograde tracer injected into VTA of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (45% of the injection in VTA) labelled axons in COAa (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 127798146

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 313324664, an anterograde tracer injected into PVT of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (52% of the injection in PVT) labelled axons in CEA (projection density 0.138).

Allen Mouse Brain Connectivity Atlas, experiment 313324664

Made by an adapter reading a database (allen-connectivity@1.3.0).

VISC (Visceral area) MBA:677 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 174361746, an anterograde tracer injected into VISC of a wild-type mouse (49% of the injection in VISC) labelled axons in CEA (projection density 0.218).

Allen Mouse Brain Connectivity Atlas, experiment 174361746

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to MARN (Magnocellular reticular nucleus) MBA:307 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in MARN (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SNc (Substantia nigra, compact part) MBA:374 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in SNc (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVi (Periventricular hypothalamic nucleus, intermediate part) MBA:118 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PVi (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182226133, an anterograde tracer injected into ENTl of a Otof-Cre mouse, the tracer Cre-dependent (99% of the injection in ENTl) labelled axons in TR (projection density 0.072).

Allen Mouse Brain Connectivity Atlas, experiment 182226133

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PeF (Perifornical nucleus) MBA:576073704 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in PeF (projection density 0.065).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 131068390, an anterograde tracer injected into PIR of a wild-type mouse (95% of the injection in PIR) labelled axons in COAp (projection density 0.087).

Allen Mouse Brain Connectivity Atlas, experiment 131068390

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to CLI (Central linear nucleus raphe) MBA:591 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in CLI (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PPN (Pedunculopontine nucleus) MBA:1052 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in PPN (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

VISC (Visceral area) MBA:677 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180436360, an anterograde tracer injected into VISC of a wild-type mouse (30% of the injection in VISC) labelled axons in LA (projection density 0.139).

Allen Mouse Brain Connectivity Atlas, experiment 180436360

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in AAA (projection density 0.069).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to HATA (Hippocampo-amygdalar transition area) MBA:589508447 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in HATA (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

Made by an adapter reading a database (allen-connectivity@1.3.0).

RE (Nucleus of reuniens) MBA:181 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 538833505, an anterograde tracer injected into RE of a Calb1-T2A-dgCre mouse, the tracer Cre-dependent (64% of the injection in RE) labelled axons in TR (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 538833505

Made by an adapter reading a database (allen-connectivity@1.3.0).

AHN (Anterior hypothalamic nucleus) MBA:88 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159375743, an anterograde tracer injected into AHN of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (53% of the injection in AHN) labelled axons in MEA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 159375743

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to LPO (Lateral preoptic area) MBA:226 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in LPO (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113226232, an anterograde tracer injected into ENTm of a wild-type mouse (90% of the injection in ENTm) labelled axons in TR (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 113226232

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 303708513, an anterograde tracer injected into VMH of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (29% of the injection in VMH) labelled axons in LA (projection density 0.064).

Allen Mouse Brain Connectivity Atlas, experiment 303708513

Made by an adapter reading a database (allen-connectivity@1.3.0).

SUM (Supramammillary nucleus) MBA:525 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 581350498, an anterograde tracer injected into SUM of a Nos1-CreERT2 mouse, the tracer Cre-dependent (26% of the injection in SUM) labelled axons in PA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 581350498

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to VLPO (Ventrolateral preoptic nucleus) MBA:689 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in VLPO (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

Made by an adapter reading a database (allen-connectivity@1.3.0).

AHN (Anterior hypothalamic nucleus) MBA:88 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146660293, an anterograde tracer injected into AHN of a wild-type mouse (28% of the injection in AHN) labelled axons in MEA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 146660293

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PAG (Periaqueductal gray) MBA:795 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in PAG (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PD (Posterodorsal preoptic nucleus) MBA:914 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in PD (projection density 0.254).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

BST (Bed nuclei of the stria terminalis) MBA:351 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267764292, an anterograde tracer injected into BST of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (62% of the injection in BST) labelled axons in IA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 267764292

Made by an adapter reading a database (allen-connectivity@1.3.0).

MRN (Midbrain reticular nucleus) MBA:128 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 174583187, an anterograde tracer injected into MRN of a wild-type mouse (19% of the injection in MRN) labelled axons in LA (projection density 0.365).

Allen Mouse Brain Connectivity Atlas, experiment 174583187

Made by an adapter reading a database (allen-connectivity@1.3.0).