A mesoscale connectome of the mouse brain

ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 585051446, an anterograde tracer injected into ENTm of a wild-type mouse (92% of the injection in ENTm) labelled axons in COAp (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 585051446

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PIR (Piriform area) MBA:961 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 131068390, an anterograde tracer injected into PIR of a wild-type mouse (95% of the injection in PIR) labelled axons in IA (projection density 0.087).

Allen Mouse Brain Connectivity Atlas, experiment 131068390

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ILA (Infralimbic area) MBA:44 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286313491, an anterograde tracer injected into ILA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (52% of the injection in ILA) labelled axons in BMA (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 286313491

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DR (Dorsal nucleus raphe) MBA:872 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168300027, an anterograde tracer injected into DR of a Slc6a4-Cre_ET33 mouse, the tracer Cre-dependent (27% of the injection in DR) labelled axons in BA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 168300027

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NDB (Diagonal band nucleus) MBA:596 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158257355, an anterograde tracer injected into NDB of a wild-type mouse (18% of the injection in NDB) labelled axons in CEA (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 158257355

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PIR (Piriform area) MBA:961 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112307046, an anterograde tracer injected into PIR of a wild-type mouse (76% of the injection in PIR) labelled axons in IA (projection density 0.052).

Allen Mouse Brain Connectivity Atlas, experiment 112307046

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to ORBvl (Orbital area, ventrolateral part) MBA:746 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in ORBvl (projection density 0.054).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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CEA (Central amygdalar nucleus) MBA:536 projects to I5 (Intertrigeminal nucleus) MBA:549009227 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in I5 (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

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ENTl (Entorhinal area, lateral part) MBA:918 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180297139, an anterograde tracer injected into ENTl of a wild-type mouse (93% of the injection in ENTl) labelled axons in IA (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 180297139

Made by an adapter reading a database (allen-connectivity@1.3.0).

PB (Parabrachial nucleus) MBA:867 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 313141786, an anterograde tracer injected into PB of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (71% of the injection in PB) labelled axons in IA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 313141786

Made by an adapter reading a database (allen-connectivity@1.3.0).

LA (Lateral amygdalar nucleus) MBA:131 projects to ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126863090, an anterograde tracer injected into LA of a Kcnc2-Cre mouse, the tracer Cre-dependent (39% of the injection in LA) labelled axons in ENTm (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 126863090

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in SO (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183225830, an anterograde tracer injected into PVT of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (54% of the injection in PVT) labelled axons in AAA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 183225830

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SUB (Subiculum) MBA:502 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 152994878, an anterograde tracer injected into SUB of a wild-type mouse (58% of the injection in SUB) labelled axons in BLA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 152994878

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to OT (Olfactory tubercle) MBA:754 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 508775240, an anterograde tracer injected into BMA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (61% of the injection in BMA) labelled axons in OT (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 508775240

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114472145, an anterograde tracer injected into ENTl of a wild-type mouse (94% of the injection in ENTl) labelled axons in MEA (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 114472145

Made by an adapter reading a database (allen-connectivity@1.3.0).

BST (Bed nuclei of the stria terminalis) MBA:351 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 194948535, an anterograde tracer injected into BST of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (58% of the injection in BST) labelled axons in MEA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 194948535

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CP (Caudoputamen) MBA:672 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113505468, an anterograde tracer injected into CP of a wild-type mouse (58% of the injection in CP) labelled axons in BLA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 113505468

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293469501, an anterograde tracer injected into MEA of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (77% of the injection in MEA) labelled axons in BA (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 293469501

Made by an adapter reading a database (allen-connectivity@1.3.0).

SI (Substantia innominata) MBA:342 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304762245, an anterograde tracer injected into SI of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (50% of the injection in SI) labelled axons in AAA (projection density 0.055).

Allen Mouse Brain Connectivity Atlas, experiment 304762245

Made by an adapter reading a database (allen-connectivity@1.3.0).

LHA (Lateral hypothalamic area) MBA:194 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127470271, an anterograde tracer injected into LHA of a wild-type mouse (31% of the injection in LHA) labelled axons in CEA (projection density 0.070).

Allen Mouse Brain Connectivity Atlas, experiment 127470271

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127907465, an anterograde tracer injected into PIR of a wild-type mouse (89% of the injection in PIR) labelled axons in BLA (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 127907465

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to VMPO (Ventromedial preoptic nucleus) MBA:576073699 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in VMPO (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

VISC (Visceral area) MBA:677 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180917660, an anterograde tracer injected into VISC of a wild-type mouse (60% of the injection in VISC) labelled axons in TR (projection density 0.166).

Allen Mouse Brain Connectivity Atlas, experiment 180917660

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ADP (Anterodorsal preoptic nucleus) MBA:72 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114249084, an anterograde tracer injected into COAp of a wild-type mouse (100% of the injection in COAp) labelled axons in ADP (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 114249084

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to RE (Nucleus of reuniens) MBA:181 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in RE (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PVHd (Paraventricular hypothalamic nucleus, descending division) MBA:63 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in PVHd (projection density 0.052).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SAG (Nucleus sagulum) MBA:271 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in SAG (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in SO (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

Made by an adapter reading a database (allen-connectivity@1.3.0).

LHA (Lateral hypothalamic area) MBA:194 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158373181, an anterograde tracer injected into LHA of a wild-type mouse (35% of the injection in LHA) labelled axons in IA (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 158373181

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 586054741, an anterograde tracer injected into PIL of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (49% of the injection in PIL) labelled axons in COAa (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 586054741

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in SO (projection density 0.103).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AD (Anterodorsal nucleus) MBA:64 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in AD (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157654069, an anterograde tracer injected into PIR of a wild-type mouse (55% of the injection in PIR) labelled axons in BMA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 157654069

Made by an adapter reading a database (allen-connectivity@1.3.0).

NDB (Diagonal band nucleus) MBA:596 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286319739, an anterograde tracer injected into NDB of a Ntrk1-IRES-Cre mouse, the tracer Cre-dependent (72% of the injection in NDB) labelled axons in COAp (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 286319739

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to LSr (Lateral septal nucleus, rostral (rostroventral) part) MBA:258 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in LSr (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVH (Paraventricular hypothalamic nucleus) MBA:38 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127470976, an anterograde tracer injected into PVH of a Ucn3-Cre_KF43 mouse, the tracer Cre-dependent (29% of the injection in PVH) labelled axons in PA (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 127470976

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PMv (Ventral premammillary nucleus) MBA:1004 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 299654968, an anterograde tracer injected into PMv of a Tac1-IRES2-Cre mouse, the tracer Cre-dependent (33% of the injection in PMv) labelled axons in PA (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 299654968

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PS (Parastrial nucleus) MBA:1109 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in PS (projection density 0.069).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

Made by an adapter reading a database (allen-connectivity@1.3.0).

SGN (Suprageniculate nucleus) MBA:325 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113165340, an anterograde tracer injected into SGN of a Etv1-CreERT2 mouse, the tracer Cre-dependent (16% of the injection in SGN) labelled axons in LA (projection density 0.281).

Allen Mouse Brain Connectivity Atlas, experiment 113165340

Made by an adapter reading a database (allen-connectivity@1.3.0).

SI (Substantia innominata) MBA:342 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146045723, an anterograde tracer injected into SI of a wild-type mouse (39% of the injection in SI) labelled axons in AAA (projection density 0.087).

Allen Mouse Brain Connectivity Atlas, experiment 146045723

Made by an adapter reading a database (allen-connectivity@1.3.0).

PT (Parataenial nucleus) MBA:15 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176897793, an anterograde tracer injected into PT of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (66% of the injection in PT) labelled axons in IA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 176897793

Made by an adapter reading a database (allen-connectivity@1.3.0).

BST (Bed nuclei of the stria terminalis) MBA:351 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267763584, an anterograde tracer injected into BST of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (69% of the injection in BST) labelled axons in IA (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 267763584

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PS (Parastrial nucleus) MBA:1109 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in PS (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to OT (Olfactory tubercle) MBA:754 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267813932, an anterograde tracer injected into BMA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (38% of the injection in BMA) labelled axons in OT (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 267813932

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to ADP (Anterodorsal preoptic nucleus) MBA:72 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in ADP (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286303000, an anterograde tracer injected into MEA of a Slc6a3-Cre mouse, the tracer Cre-dependent (97% of the injection in MEA) labelled axons in COAa (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 286303000

Made by an adapter reading a database (allen-connectivity@1.3.0).

MRN (Midbrain reticular nucleus) MBA:128 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113400134, an anterograde tracer injected into MRN of a wild-type mouse (17% of the injection in MRN) labelled axons in IA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 113400134

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to IMD (Intermediodorsal nucleus of the thalamus) MBA:59 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in IMD (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

Made by an adapter reading a database (allen-connectivity@1.3.0).

MS (Medial septal nucleus) MBA:564 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265944939, an anterograde tracer injected into MS of a Ntrk1-IRES-Cre mouse, the tracer Cre-dependent (60% of the injection in MS) labelled axons in TR (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 265944939

Made by an adapter reading a database (allen-connectivity@1.3.0).