A mesoscale connectome of the mouse brain

BST (Bed nuclei of the stria terminalis) MBA:351 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 204832917, an anterograde tracer injected into BST of a Crh-IRES-Cre_ZJH mouse, the tracer Cre-dependent (45% of the injection in BST) labelled axons in AAA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 204832917

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MEA (Medial amygdalar nucleus) MBA:403 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 564357489, an anterograde tracer injected into MEA of a Esr2-IRES2-Cre mouse, the tracer Cre-dependent (54% of the injection in MEA) labelled axons in MPO (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 564357489

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MEA (Medial amygdalar nucleus) MBA:403 projects to PS (Parastrial nucleus) MBA:1109 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in PS (projection density 0.068).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PT (Parataenial nucleus) MBA:15 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in PT (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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CEA (Central amygdalar nucleus) MBA:536 projects to PP (Peripeduncular nucleus) MBA:1044 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in PP (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

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CEA (Central amygdalar nucleus) MBA:536 projects to PSTN (Parasubthalamic nucleus) MBA:364 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in PSTN (projection density 0.183).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263974698, an anterograde tracer injected into ENTl of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (96% of the injection in ENTl) labelled axons in AAA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 263974698

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VTA (Ventral tegmental area) MBA:749 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127651139, an anterograde tracer injected into VTA of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (27% of the injection in VTA) labelled axons in BLA (projection density 0.061).

Allen Mouse Brain Connectivity Atlas, experiment 127651139

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SUB (Subiculum) MBA:502 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 288322091, an anterograde tracer injected into SUB of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (43% of the injection in SUB) labelled axons in TR (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 288322091

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AIp (Agranular insular area, posterior part) MBA:111 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183330908, an anterograde tracer injected into AIp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (65% of the injection in AIp) labelled axons in BLA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 183330908

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PPN (Pedunculopontine nucleus) MBA:1052 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in PPN (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

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SGN (Suprageniculate nucleus) MBA:325 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182805258, an anterograde tracer injected into SGN of a Vipr2-Cre_KE2 mouse, the tracer Cre-dependent (30% of the injection in SGN) labelled axons in MEA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 182805258

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CEA (Central amygdalar nucleus) MBA:536 projects to AMB (Nucleus ambiguus) MBA:135 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in AMB (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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CA1 (Field CA1) MBA:382 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286610216, an anterograde tracer injected into CA1 of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (83% of the injection in CA1) labelled axons in MEA (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 286610216

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PT (Parataenial nucleus) MBA:15 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in PT (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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CEA (Central amygdalar nucleus) MBA:536 projects to ASO (Accessory supraoptic group) MBA:332 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in ASO (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 557199437, an anterograde tracer injected into ENTm of a Ntng2-IRES2-Cre mouse, the tracer Cre-dependent (93% of the injection in ENTm) labelled axons in TR (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 557199437

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to FS (Fundus of striatum) MBA:998 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in FS (projection density 0.293).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

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CEA (Central amygdalar nucleus) MBA:536 projects to ACVII (Accessory facial motor nucleus) MBA:576 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 241279261, an anterograde tracer injected into CEA of a Tac2-IRES2-Cre mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in ACVII (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 241279261

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PIR (Piriform area) MBA:961 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184259031, an anterograde tracer injected into PIR of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (98% of the injection in PIR) labelled axons in BLA (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 184259031

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 478095541, an anterograde tracer injected into VMH of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (28% of the injection in VMH) labelled axons in CEA (projection density 0.112).

Allen Mouse Brain Connectivity Atlas, experiment 478095541

Made by an adapter reading a database (allen-connectivity@1.3.0).

PT (Parataenial nucleus) MBA:15 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167373923, an anterograde tracer injected into PT of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (75% of the injection in PT) labelled axons in BLA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 167373923

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to RR (Midbrain reticular nucleus, retrorubral area) MBA:246 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in RR (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVT (Paraventricular nucleus of the thalamus) MBA:149 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in PVT (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to VISpl (Posterolateral visual area) MBA:425 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in VISpl (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 552759734, an anterograde tracer injected into VMH of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (35% of the injection in VMH) labelled axons in BLA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 552759734

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PeF (Perifornical nucleus) MBA:576073704 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in PeF (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

Made by an adapter reading a database (allen-connectivity@1.3.0).

CP (Caudoputamen) MBA:672 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 513775257, an anterograde tracer injected into CP of a Ntng2-IRES2-Cre mouse, the tracer Cre-dependent (36% of the injection in CP) labelled axons in MEA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 513775257

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in ENTm (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PPN (Pedunculopontine nucleus) MBA:1052 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in PPN (projection density 0.075).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

AAA (Anterior amygdalar area) MBA:23 projects to CLA (Claustrum) MBA:583 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in CLA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176886958, an anterograde tracer injected into VMH of a Esr1-2A-Cre mouse, the tracer Cre-dependent (33% of the injection in VMH) labelled axons in MEA (projection density 0.084).

Allen Mouse Brain Connectivity Atlas, experiment 176886958

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SSp-m (Primary somatosensory area, mouth) MBA:345 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in SSp-m (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126116142, an anterograde tracer injected into AHN of a wild-type mouse (32% of the injection in AHN) labelled axons in BMA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 126116142

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 313324664, an anterograde tracer injected into PVT of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (52% of the injection in PVT) labelled axons in IA (projection density 0.097).

Allen Mouse Brain Connectivity Atlas, experiment 313324664

Made by an adapter reading a database (allen-connectivity@1.3.0).

DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304617742, an anterograde tracer injected into DMH of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (12% of the injection in DMH) labelled axons in LA (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 304617742

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MEA (Medial amygdalar nucleus) MBA:403 projects to IPN (Interpeduncular nucleus) MBA:100 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in IPN (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

AAA (Anterior amygdalar area) MBA:23 projects to PPN (Pedunculopontine nucleus) MBA:1052 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in PPN (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146984209, an anterograde tracer injected into PIR of a wild-type mouse (62% of the injection in PIR) labelled axons in LA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 146984209

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to RH (Rhomboid nucleus) MBA:189 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in RH (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SUT (Supratrigeminal nucleus) MBA:534 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in SUT (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PVi (Periventricular hypothalamic nucleus, intermediate part) MBA:118 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in PVi (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127139568, an anterograde tracer injected into ENTm of a wild-type mouse (56% of the injection in ENTm) labelled axons in LA (projection density 0.076).

Allen Mouse Brain Connectivity Atlas, experiment 127139568

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PL (Prelimbic area) MBA:972 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263106036, an anterograde tracer injected into PL of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (46% of the injection in PL) labelled axons in COAa (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 263106036

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to P5 (Peritrigeminal zone) MBA:549009215 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in P5 (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SLC (Subceruleus nucleus) MBA:350 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in SLC (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 142656218, an anterograde tracer injected into ENTl of a wild-type mouse (50% of the injection in ENTl) labelled axons in IA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 142656218

Made by an adapter reading a database (allen-connectivity@1.3.0).

LM (Lateral mammillary nucleus) MBA:210 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 520619072, an anterograde tracer injected into LM of a Hdc-Cre_IM1 mouse, the tracer Cre-dependent (19% of the injection in LM) labelled axons in AAA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 520619072

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in BLA (projection density 0.122).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 298720898, an anterograde tracer injected into PIR of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (63% of the injection in PIR) labelled axons in BLA (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 298720898

Made by an adapter reading a database (allen-connectivity@1.3.0).