A mesoscale connectome of the mouse brain

RE (Nucleus of reuniens) MBA:181 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175374982, an anterograde tracer injected into RE of a wild-type mouse (64% of the injection in RE) labelled axons in AAA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 175374982

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MEA (Medial amygdalar nucleus) MBA:403 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in SO (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

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PIR (Piriform area) MBA:961 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 298720898, an anterograde tracer injected into PIR of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (63% of the injection in PIR) labelled axons in BMA (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 298720898

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AId (Agranular insular area, dorsal part) MBA:104 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 299783689, an anterograde tracer injected into AId of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (45% of the injection in AId) labelled axons in CEA (projection density 0.066).

Allen Mouse Brain Connectivity Atlas, experiment 299783689

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SI (Substantia innominata) MBA:342 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 299245589, an anterograde tracer injected into SI of a Gad2-IRES-Cre mouse, the tracer Cre-dependent (28% of the injection in SI) labelled axons in COAa (projection density 0.070).

Allen Mouse Brain Connectivity Atlas, experiment 299245589

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to CP (Caudoputamen) MBA:672 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in CP (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to LM (Lateral mammillary nucleus) MBA:210 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in LM (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

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CEA (Central amygdalar nucleus) MBA:536 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in BMA (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

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MG (Medial geniculate complex) MBA:475 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180520257, an anterograde tracer injected into MG of a wild-type mouse (70% of the injection in MG) labelled axons in LA (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 180520257

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CEA (Central amygdalar nucleus) MBA:536 projects to ACVII (Accessory facial motor nucleus) MBA:576 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in ACVII (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVHd (Paraventricular hypothalamic nucleus, descending division) MBA:63 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PVHd (projection density 0.086).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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MEA (Medial amygdalar nucleus) MBA:403 projects to PMv (Ventral premammillary nucleus) MBA:1004 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304694870, an anterograde tracer injected into MEA of a Nos1-CreERT2 mouse, the tracer Cre-dependent (100% of the injection in MEA) labelled axons in PMv (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 304694870

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PC5 (Parvicellular motor 5 nucleus) MBA:549009223 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120281646, an anterograde tracer injected into CEA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (98% of the injection in CEA) labelled axons in PC5 (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 120281646

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MEA (Medial amygdalar nucleus) MBA:403 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293469501, an anterograde tracer injected into MEA of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (77% of the injection in MEA) labelled axons in COAa (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 293469501

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AIv (Agranular insular area, ventral part) MBA:119 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 166153483, an anterograde tracer injected into AIv of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (57% of the injection in AIv) labelled axons in BMA (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 166153483

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 313325371, an anterograde tracer injected into VMH of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (18% of the injection in VMH) labelled axons in AAA (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 313325371

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PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 287880821, an anterograde tracer injected into PIL of a Calb2-IRES-Cre mouse, the tracer Cre-dependent (35% of the injection in PIL) labelled axons in LA (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 287880821

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MEA (Medial amygdalar nucleus) MBA:403 projects to MD (Mediodorsal nucleus of thalamus) MBA:362 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in MD (projection density 0.075).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

SNr (Substantia nigra, reticular part) MBA:381 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 478097069, an anterograde tracer injected into SNr of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (32% of the injection in SNr) labelled axons in CEA (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 478097069

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in BMA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 266489212, an anterograde tracer injected into VMH of a Slc32a1-IRES-Cre mouse, the tracer Cre-dependent (28% of the injection in VMH) labelled axons in CEA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 266489212

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to LPO (Lateral preoptic area) MBA:226 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in LPO (projection density 0.097).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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CEA (Central amygdalar nucleus) MBA:536 projects to SSp-n (Primary somatosensory area, nose) MBA:353 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in SSp-n (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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MEA (Medial amygdalar nucleus) MBA:403 projects to Pa4 (Paratrochlear nucleus) MBA:606826663 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in Pa4 (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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TR (Postpiriform transition area) MBA:566 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126653015, an anterograde tracer injected into TR of a wild-type mouse (99% of the injection in TR) labelled axons in CEA (projection density 0.221).

Allen Mouse Brain Connectivity Atlas, experiment 126653015

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158258062, an anterograde tracer injected into VMH of a wild-type mouse (20% of the injection in VMH) labelled axons in BMA (projection density 0.124).

Allen Mouse Brain Connectivity Atlas, experiment 158258062

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DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 266174751, an anterograde tracer injected into DMH of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (11% of the injection in DMH) labelled axons in COAa (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 266174751

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CEA (Central amygdalar nucleus) MBA:536 projects to MD (Mediodorsal nucleus of thalamus) MBA:362 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in MD (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to EPv (Endopiriform nucleus, ventral part) MBA:966 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in EPv (projection density 0.084).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

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MEA (Medial amygdalar nucleus) MBA:403 projects to PST (Preparasubthalamic nucleus) MBA:356 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PST (projection density 0.086).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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MEA (Medial amygdalar nucleus) MBA:403 projects to RCH (Retrochiasmatic area) MBA:173 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304694870, an anterograde tracer injected into MEA of a Nos1-CreERT2 mouse, the tracer Cre-dependent (100% of the injection in MEA) labelled axons in RCH (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 304694870

Made by an adapter reading a database (allen-connectivity@1.3.0).

PH (Posterior hypothalamic nucleus) MBA:946 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175374275, an anterograde tracer injected into PH of a wild-type mouse (32% of the injection in PH) labelled axons in CEA (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 175374275

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CEA (Central amygdalar nucleus) MBA:536 projects to B (Barrington's nucleus) MBA:280 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in B (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SUM (Supramammillary nucleus) MBA:525 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in SUM (projection density 0.078).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267150949, an anterograde tracer injected into COAp of a Slc17a7-IRES2-Cre mouse, the tracer Cre-dependent (53% of the injection in COAp) labelled axons in LA (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 267150949

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PIR (Piriform area) MBA:961 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146984209, an anterograde tracer injected into PIR of a wild-type mouse (62% of the injection in PIR) labelled axons in AAA (projection density 0.080).

Allen Mouse Brain Connectivity Atlas, experiment 146984209

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to XII (Hypoglossal nucleus) MBA:773 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in XII (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 523705737, an anterograde tracer injected into AHN of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (16% of the injection in AHN) labelled axons in LA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 523705737

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CEA (Central amygdalar nucleus) MBA:536 projects to PVT (Paraventricular nucleus of the thalamus) MBA:149 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in PVT (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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MEA (Medial amygdalar nucleus) MBA:403 projects to AON (Anterior olfactory nucleus) MBA:159 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in AON (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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TU (Tuberal nucleus) MBA:614 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264248605, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (36% of the injection in TU) labelled axons in COAp (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 264248605

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to AUDv (Ventral auditory area) MBA:1018 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in AUDv (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

PT (Parataenial nucleus) MBA:15 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 123662982, an anterograde tracer injected into PT of a wild-type mouse (28% of the injection in PT) labelled axons in COAp (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 123662982

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TMv (Tuberomammillary nucleus, ventral part) MBA:1 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 520336173, an anterograde tracer injected into TMv of a Hdc-Cre_IM1 mouse, the tracer Cre-dependent (21% of the injection in TMv) labelled axons in AAA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 520336173

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VTA (Ventral tegmental area) MBA:749 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 156314762, an anterograde tracer injected into VTA of a Th-IRES-CreER mouse, the tracer Cre-dependent (38% of the injection in VTA) labelled axons in IA (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 156314762

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PeF (Perifornical nucleus) MBA:576073704 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in PeF (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to DR (Dorsal nucleus raphe) MBA:872 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in DR (projection density 0.060).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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ECT (Ectorhinal area) MBA:895 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180435652, an anterograde tracer injected into ECT of a wild-type mouse (38% of the injection in ECT) labelled axons in BA (projection density 0.052).

Allen Mouse Brain Connectivity Atlas, experiment 180435652

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 298720898, an anterograde tracer injected into PIR of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (63% of the injection in PIR) labelled axons in COAa (projection density 0.108).

Allen Mouse Brain Connectivity Atlas, experiment 298720898

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to RR (Midbrain reticular nucleus, retrorubral area) MBA:246 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in RR (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

Made by an adapter reading a database (allen-connectivity@1.3.0).