A mesoscale connectome of the mouse brain

MEA (Medial amygdalar nucleus) MBA:403 projects to PAA (Piriform-amygdalar area) MBA:788 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in PAA (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AOB (Accessory olfactory bulb) MBA:151 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in AOB (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to LT (Lateral terminal nucleus of the accessory optic tract) MBA:66 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305321177, an anterograde tracer injected into BLA of a Slc32a1-IRES-Cre mouse, the tracer Cre-dependent (37% of the injection in BLA) labelled axons in LT (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 305321177

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293469501, an anterograde tracer injected into MEA of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (77% of the injection in MEA) labelled axons in PIL (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 293469501

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RE (Nucleus of reuniens) MBA:181 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 174957972, an anterograde tracer injected into RE of a wild-type mouse (25% of the injection in RE) labelled axons in AAA (projection density 0.052).

Allen Mouse Brain Connectivity Atlas, experiment 174957972

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PVHd (Paraventricular hypothalamic nucleus, descending division) MBA:63 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in PVHd (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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LP (Lateral posterior nucleus of the thalamus) MBA:218 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183282970, an anterograde tracer injected into LP of a Calb2-IRES-Cre mouse, the tracer Cre-dependent (97% of the injection in LP) labelled axons in BLA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 183282970

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in BLA (projection density 0.065).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

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PIR (Piriform area) MBA:961 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146857301, an anterograde tracer injected into PIR of a wild-type mouse (79% of the injection in PIR) labelled axons in COAp (projection density 0.168).

Allen Mouse Brain Connectivity Atlas, experiment 146857301

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 232311959, an anterograde tracer injected into ENTl of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (76% of the injection in ENTl) labelled axons in BLA (projection density 0.162).

Allen Mouse Brain Connectivity Atlas, experiment 232311959

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to ASO (Accessory supraoptic group) MBA:332 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in ASO (projection density 0.076).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VPMpc (Ventral posteromedial nucleus of the thalamus, parvicellular part) MBA:741 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in VPMpc (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

IPN (Interpeduncular nucleus) MBA:100 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267538735, an anterograde tracer injected into IPN of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (20% of the injection in IPN) labelled axons in BMA (projection density 0.062).

Allen Mouse Brain Connectivity Atlas, experiment 267538735

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to ZI (Zona incerta) MBA:797 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in ZI (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to VISpor (Postrhinal area) MBA:312782628 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in VISpor (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VISC (Visceral area) MBA:677 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in VISC (projection density 0.067).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

VTA (Ventral tegmental area) MBA:749 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 156314762, an anterograde tracer injected into VTA of a Th-IRES-CreER mouse, the tracer Cre-dependent (38% of the injection in VTA) labelled axons in TR (projection density 0.066).

Allen Mouse Brain Connectivity Atlas, experiment 156314762

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to SUB (Subiculum) MBA:502 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in SUB (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PH (Posterior hypothalamic nucleus) MBA:946 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in PH (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PD (Posterodorsal preoptic nucleus) MBA:914 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in PD (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to NTS (Nucleus of the solitary tract) MBA:651 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in NTS (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to Acs5 (Accessory trigeminal nucleus) MBA:549009219 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in Acs5 (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272874417, an anterograde tracer injected into PVT of a wild-type mouse (38% of the injection in PVT) labelled axons in IA (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 272874417

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to IAD (Interanterodorsal nucleus of the thalamus) MBA:1113 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in IAD (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

AId (Agranular insular area, dorsal part) MBA:104 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112596790, an anterograde tracer injected into AId of a wild-type mouse (83% of the injection in AId) labelled axons in COAa (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 112596790

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ORBm (Orbital area, medial part) MBA:731 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in ORBm (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVi (Periventricular hypothalamic nucleus, intermediate part) MBA:118 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in PVi (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

Made by an adapter reading a database (allen-connectivity@1.3.0).

AAA (Anterior amygdalar area) MBA:23 projects to DR (Dorsal nucleus raphe) MBA:872 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in DR (projection density 0.078).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

AAA (Anterior amygdalar area) MBA:23 projects to MD (Mediodorsal nucleus of thalamus) MBA:362 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in MD (projection density 0.055).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SPFm (Subparafascicular nucleus, magnocellular part) MBA:414 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in SPFm (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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MEA (Medial amygdalar nucleus) MBA:403 projects to LSv (Lateral septal nucleus, ventral part) MBA:266 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in LSv (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

Made by an adapter reading a database (allen-connectivity@1.3.0).

RE (Nucleus of reuniens) MBA:181 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 310976160, an anterograde tracer injected into RE of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (35% of the injection in RE) labelled axons in MEA (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 310976160

Made by an adapter reading a database (allen-connectivity@1.3.0).

CA1 (Field CA1) MBA:382 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182226839, an anterograde tracer injected into CA1 of a Vipr2-Cre_KE2 mouse, the tracer Cre-dependent (44% of the injection in CA1) labelled axons in COAp (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 182226839

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MEA (Medial amygdalar nucleus) MBA:403 projects to VMH (Ventromedial hypothalamic nucleus) MBA:693 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in VMH (projection density 0.383).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

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VISC (Visceral area) MBA:677 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180436360, an anterograde tracer injected into VISC of a wild-type mouse (30% of the injection in VISC) labelled axons in TR (projection density 0.076).

Allen Mouse Brain Connectivity Atlas, experiment 180436360

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CP (Caudoputamen) MBA:672 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 117317884, an anterograde tracer injected into CP of a wild-type mouse (38% of the injection in CP) labelled axons in IA (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 117317884

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EPd (Endopiriform nucleus, dorsal part) MBA:952 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 308549214, an anterograde tracer injected into EPd of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (54% of the injection in EPd) labelled axons in AAA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 308549214

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVpo (Periventricular hypothalamic nucleus, preoptic part) MBA:133 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PVpo (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to P5 (Peritrigeminal zone) MBA:549009215 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in P5 (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AIp (Agranular insular area, posterior part) MBA:111 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in AIp (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 131068390, an anterograde tracer injected into PIR of a wild-type mouse (95% of the injection in PIR) labelled axons in BMA (projection density 0.115).

Allen Mouse Brain Connectivity Atlas, experiment 131068390

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to MEPO (Median preoptic nucleus) MBA:452 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in MEPO (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

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MEA (Medial amygdalar nucleus) MBA:403 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in SO (projection density 0.108).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to RL (Rostral linear nucleus raphe) MBA:197 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in RL (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

AAA (Anterior amygdalar area) MBA:23 projects to PIR (Piriform area) MBA:961 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in PIR (projection density 0.089).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

ECT (Ectorhinal area) MBA:895 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180435652, an anterograde tracer injected into ECT of a wild-type mouse (38% of the injection in ECT) labelled axons in PA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 180435652

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 585051446, an anterograde tracer injected into ENTm of a wild-type mouse (92% of the injection in ENTm) labelled axons in BLA (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 585051446

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to AIv (Agranular insular area, ventral part) MBA:119 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in AIv (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to RCH (Retrochiasmatic area) MBA:173 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in RCH (projection density 0.112).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

AId (Agranular insular area, dorsal part) MBA:104 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112596790, an anterograde tracer injected into AId of a wild-type mouse (83% of the injection in AId) labelled axons in IA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 112596790

Made by an adapter reading a database (allen-connectivity@1.3.0).