A mesoscale connectome of the mouse brain

MM (Medial mammillary nucleus) MBA:491 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158314987, an anterograde tracer injected into MM of a wild-type mouse (26% of the injection in MM) labelled axons in AAA (projection density 0.082).

Allen Mouse Brain Connectivity Atlas, experiment 158314987

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BST (Bed nuclei of the stria terminalis) MBA:351 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 204832917, an anterograde tracer injected into BST of a Crh-IRES-Cre_ZJH mouse, the tracer Cre-dependent (45% of the injection in BST) labelled axons in BMA (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 204832917

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PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 586054741, an anterograde tracer injected into PIL of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (49% of the injection in PIL) labelled axons in CEA (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 586054741

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ZI (Zona incerta) MBA:797 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264697714, an anterograde tracer injected into ZI of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (19% of the injection in ZI) labelled axons in AAA (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 264697714

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CEA (Central amygdalar nucleus) MBA:536 projects to CM (Central medial nucleus of the thalamus) MBA:599 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in CM (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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MEA (Medial amygdalar nucleus) MBA:403 projects to PAA (Piriform-amygdalar area) MBA:788 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in PAA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ACB (Nucleus accumbens) MBA:56 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in ACB (projection density 0.166).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

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PT (Parataenial nucleus) MBA:15 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305449231, an anterograde tracer injected into PT of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (57% of the injection in PT) labelled axons in COAp (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 305449231

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MEA (Medial amygdalar nucleus) MBA:403 projects to LM (Lateral mammillary nucleus) MBA:210 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in LM (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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MEA (Medial amygdalar nucleus) MBA:403 projects to AHN (Anterior hypothalamic nucleus) MBA:88 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in AHN (projection density 0.064).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SUT (Supratrigeminal nucleus) MBA:534 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in SUT (projection density 0.119).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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ARH (Arcuate hypothalamic nucleus) MBA:223 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263369222, an anterograde tracer injected into ARH of a Pomc-Cre_BL mouse, the tracer Cre-dependent (64% of the injection in ARH) labelled axons in BMA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 263369222

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PAA (Piriform-amygdalar area) MBA:788 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 122641078, an anterograde tracer injected into PAA of a wild-type mouse (48% of the injection in PAA) labelled axons in BA (projection density 0.287).

Allen Mouse Brain Connectivity Atlas, experiment 122641078

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SI (Substantia innominata) MBA:342 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126841788, an anterograde tracer injected into SI of a Chat-IRES-Cre-neo mouse, the tracer Cre-dependent (89% of the injection in SI) labelled axons in CEA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 126841788

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VISC (Visceral area) MBA:677 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 174361746, an anterograde tracer injected into VISC of a wild-type mouse (49% of the injection in VISC) labelled axons in COAa (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 174361746

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MEA (Medial amygdalar nucleus) MBA:403 projects to PR (Perireunensis nucleus) MBA:1077 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PR (projection density 0.062).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

CA1 (Field CA1) MBA:382 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286610216, an anterograde tracer injected into CA1 of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (83% of the injection in CA1) labelled axons in LA (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 286610216

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MEA (Medial amygdalar nucleus) MBA:403 projects to ECT (Ectorhinal area) MBA:895 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in ECT (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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AId (Agranular insular area, dorsal part) MBA:104 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 262536037, an anterograde tracer injected into AId of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (84% of the injection in AId) labelled axons in BLA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 262536037

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PIR (Piriform area) MBA:961 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in PIR (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

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VTA (Ventral tegmental area) MBA:749 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165975096, an anterograde tracer injected into VTA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (17% of the injection in VTA) labelled axons in BMA (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 165975096

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SUT (Supratrigeminal nucleus) MBA:534 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in SUT (projection density 0.057).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

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MOs (Secondary motor area) MBA:993 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180709942, an anterograde tracer injected into MOs of a wild-type mouse (59% of the injection in MOs) labelled axons in BLA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 180709942

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DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 266174751, an anterograde tracer injected into DMH of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (11% of the injection in DMH) labelled axons in COAp (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 266174751

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EPd (Endopiriform nucleus, dorsal part) MBA:952 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158321996, an anterograde tracer injected into EPd of a wild-type mouse (37% of the injection in EPd) labelled axons in BMA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 158321996

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PT (Parataenial nucleus) MBA:15 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305449231, an anterograde tracer injected into PT of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (57% of the injection in PT) labelled axons in BMA (projection density 0.085).

Allen Mouse Brain Connectivity Atlas, experiment 305449231

Made by an adapter reading a database (allen-connectivity@1.3.0).

DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304617742, an anterograde tracer injected into DMH of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (12% of the injection in DMH) labelled axons in MEA (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 304617742

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ILA (Infralimbic area) MBA:44 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in ILA (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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ENTl (Entorhinal area, lateral part) MBA:918 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146553971, an anterograde tracer injected into ENTl of a wild-type mouse (61% of the injection in ENTl) labelled axons in LA (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 146553971

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CEA (Central amygdalar nucleus) MBA:536 projects to SNc (Substantia nigra, compact part) MBA:374 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 241279261, an anterograde tracer injected into CEA of a Tac2-IRES2-Cre mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in SNc (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 241279261

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to TEa (Temporal association areas) MBA:541 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in TEa (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AM (Anteromedial nucleus) MBA:127 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in AM (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

CP (Caudoputamen) MBA:672 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 513775257, an anterograde tracer injected into CP of a Ntng2-IRES2-Cre mouse, the tracer Cre-dependent (36% of the injection in CP) labelled axons in COAa (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 513775257

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MEA (Medial amygdalar nucleus) MBA:403 projects to HATA (Hippocampo-amygdalar transition area) MBA:589508447 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in HATA (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to LSr (Lateral septal nucleus, rostral (rostroventral) part) MBA:258 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in LSr (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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MOB (Main olfactory bulb) MBA:507 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146859480, an anterograde tracer injected into MOB of a Cdhr1-Cre_KG66 mouse, the tracer Cre-dependent (98% of the injection in MOB) labelled axons in COAa (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 146859480

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to BST (Bed nuclei of the stria terminalis) MBA:351 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in BST (projection density 0.198).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to FRP (Frontal pole, cerebral cortex) MBA:184 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277710753, an anterograde tracer injected into BLA of a wild-type mouse (49% of the injection in BLA) labelled axons in FRP (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 277710753

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CM (Central medial nucleus of the thalamus) MBA:599 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 303710632, an anterograde tracer injected into CM of a Lypd6-Cre_KL156 mouse, the tracer Cre-dependent (47% of the injection in CM) labelled axons in BLA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 303710632

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MEA (Medial amygdalar nucleus) MBA:403 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in BA (projection density 0.048).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in PIL (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 241279261, an anterograde tracer injected into CEA of a Tac2-IRES2-Cre mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in PIL (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 241279261

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to MARN (Magnocellular reticular nucleus) MBA:307 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in MARN (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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MEA (Medial amygdalar nucleus) MBA:403 projects to CLA (Claustrum) MBA:583 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in CLA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 552759734, an anterograde tracer injected into VMH of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (35% of the injection in VMH) labelled axons in CEA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 552759734

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MEA (Medial amygdalar nucleus) MBA:403 projects to PST (Preparasubthalamic nucleus) MBA:356 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in PST (projection density 0.094).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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PIR (Piriform area) MBA:961 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158374671, an anterograde tracer injected into PIR of a wild-type mouse (31% of the injection in PIR) labelled axons in BMA (projection density 0.444).

Allen Mouse Brain Connectivity Atlas, experiment 158374671

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SUM (Supramammillary nucleus) MBA:525 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304947804, an anterograde tracer injected into SUM of a Nos1-CreERT2 mouse, the tracer Cre-dependent (41% of the injection in SUM) labelled axons in IA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 304947804

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PMv (Ventral premammillary nucleus) MBA:1004 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 294316542, an anterograde tracer injected into PMv of a Tac1-IRES2-Cre mouse, the tracer Cre-dependent (26% of the injection in PMv) labelled axons in COAp (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 294316542

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VISpor (Postrhinal area) MBA:312782628 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176429574, an anterograde tracer injected into VISpor of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (52% of the injection in VISpor) labelled axons in LA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 176429574

Made by an adapter reading a database (allen-connectivity@1.3.0).