A mesoscale connectome of the mouse brain

CEA (Central amygdalar nucleus) MBA:536 projects to TMv (Tuberomammillary nucleus, ventral part) MBA:1 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in TMv (projection density 0.072).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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AAA (Anterior amygdalar area) MBA:23 projects to LDT (Laterodorsal tegmental nucleus) MBA:162 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in LDT (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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PB (Parabrachial nucleus) MBA:867 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183284388, an anterograde tracer injected into PB of a Calb2-IRES-Cre mouse, the tracer Cre-dependent (91% of the injection in PB) labelled axons in BMA (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 183284388

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SPFp (Subparafascicular nucleus, parvicellular part) MBA:422 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in SPFp (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

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NLOT (Nucleus of the lateral olfactory tract) MBA:619 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159151138, an anterograde tracer injected into NLOT of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (67% of the injection in NLOT) labelled axons in LA (projection density 0.064).

Allen Mouse Brain Connectivity Atlas, experiment 159151138

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DR (Dorsal nucleus raphe) MBA:872 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168300027, an anterograde tracer injected into DR of a Slc6a4-Cre_ET33 mouse, the tracer Cre-dependent (27% of the injection in DR) labelled axons in PA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 168300027

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PB (Parabrachial nucleus) MBA:867 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 545427588, an anterograde tracer injected into PB of a Npr3-IRES2-Cre mouse, the tracer Cre-dependent (65% of the injection in PB) labelled axons in CEA (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 545427588

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVa (Periventricular hypothalamic nucleus, anterior part) MBA:30 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in PVa (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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PAA (Piriform-amygdalar area) MBA:788 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 122641078, an anterograde tracer injected into PAA of a wild-type mouse (48% of the injection in PAA) labelled axons in PA (projection density 0.062).

Allen Mouse Brain Connectivity Atlas, experiment 122641078

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in PIL (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PD (Posterodorsal preoptic nucleus) MBA:914 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in PD (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

Made by an adapter reading a database (allen-connectivity@1.3.0).

LHA (Lateral hypothalamic area) MBA:194 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127470271, an anterograde tracer injected into LHA of a wild-type mouse (31% of the injection in LHA) labelled axons in COAa (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 127470271

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PAA (Piriform-amygdalar area) MBA:788 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in PAA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

Made by an adapter reading a database (allen-connectivity@1.3.0).

NDB (Diagonal band nucleus) MBA:596 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158257355, an anterograde tracer injected into NDB of a wild-type mouse (18% of the injection in NDB) labelled axons in IA (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 158257355

Made by an adapter reading a database (allen-connectivity@1.3.0).

MRN (Midbrain reticular nucleus) MBA:128 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 174583187, an anterograde tracer injected into MRN of a wild-type mouse (19% of the injection in MRN) labelled axons in PA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 174583187

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in DMH (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 585051446, an anterograde tracer injected into ENTm of a wild-type mouse (92% of the injection in ENTm) labelled axons in LA (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 585051446

Made by an adapter reading a database (allen-connectivity@1.3.0).

MD (Mediodorsal nucleus of thalamus) MBA:362 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175739791, an anterograde tracer injected into MD of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (39% of the injection in MD) labelled axons in PA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 175739791

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MEA (Medial amygdalar nucleus) MBA:403 projects to LDT (Laterodorsal tegmental nucleus) MBA:162 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in LDT (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PSTN (Parasubthalamic nucleus) MBA:364 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in PSTN (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVHd (Paraventricular hypothalamic nucleus, descending division) MBA:63 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in PVHd (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ECT (Ectorhinal area) MBA:895 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in ECT (projection density 0.059).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157654069, an anterograde tracer injected into PIR of a wild-type mouse (55% of the injection in PIR) labelled axons in AAA (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 157654069

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to NLOT (Nucleus of the lateral olfactory tract) MBA:619 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 508775240, an anterograde tracer injected into BMA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (61% of the injection in BMA) labelled axons in NLOT (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 508775240

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 142654100, an anterograde tracer injected into ENTl of a wild-type mouse (91% of the injection in ENTl) labelled axons in MEA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 142654100

Made by an adapter reading a database (allen-connectivity@1.3.0).

MS (Medial septal nucleus) MBA:564 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 100141597, an anterograde tracer injected into MS of a wild-type mouse (58% of the injection in MS) labelled axons in BA (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 100141597

Made by an adapter reading a database (allen-connectivity@1.3.0).

TR (Postpiriform transition area) MBA:566 projects to AIp (Agranular insular area, posterior part) MBA:111 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126653015, an anterograde tracer injected into TR of a wild-type mouse (99% of the injection in TR) labelled axons in AIp (projection density 0.077).

Allen Mouse Brain Connectivity Atlas, experiment 126653015

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293009265, an anterograde tracer injected into ENTl of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (82% of the injection in ENTl) labelled axons in LA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 293009265

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SSp-n (Primary somatosensory area, nose) MBA:353 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293469501, an anterograde tracer injected into MEA of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (77% of the injection in MEA) labelled axons in SSp-n (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 293469501

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SPA (Subparafascicular area) MBA:609 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 241279261, an anterograde tracer injected into CEA of a Tac2-IRES2-Cre mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in SPA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 241279261

Made by an adapter reading a database (allen-connectivity@1.3.0).

IF (Interfascicular nucleus raphe) MBA:12 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301732962, an anterograde tracer injected into IF of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (21% of the injection in IF) labelled axons in TR (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 301732962

Made by an adapter reading a database (allen-connectivity@1.3.0).

AIp (Agranular insular area, posterior part) MBA:111 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 485847695, an anterograde tracer injected into AIp of a Ntng2-IRES2-Cre mouse, the tracer Cre-dependent (68% of the injection in AIp) labelled axons in BMA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 485847695

Made by an adapter reading a database (allen-connectivity@1.3.0).

NDB (Diagonal band nucleus) MBA:596 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 177605425, an anterograde tracer injected into NDB of a Chat-IRES-Cre-neo mouse, the tracer Cre-dependent (62% of the injection in NDB) labelled axons in COAp (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 177605425

Made by an adapter reading a database (allen-connectivity@1.3.0).

TR (Postpiriform transition area) MBA:566 projects to OT (Olfactory tubercle) MBA:754 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126653015, an anterograde tracer injected into TR of a wild-type mouse (99% of the injection in TR) labelled axons in OT (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 126653015

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in BMA (projection density 0.081).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

Made by an adapter reading a database (allen-connectivity@1.3.0).

MD (Mediodorsal nucleus of thalamus) MBA:362 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278067445, an anterograde tracer injected into MD of a Prkcd-GluCla-CFP-IRES-Cre mouse, the tracer Cre-dependent (39% of the injection in MD) labelled axons in BLA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 278067445

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VMH (Ventromedial hypothalamic nucleus) MBA:693 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 309386361, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (97% of the injection in MEA) labelled axons in VMH (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 309386361

Made by an adapter reading a database (allen-connectivity@1.3.0).

ARH (Arcuate hypothalamic nucleus) MBA:223 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263369222, an anterograde tracer injected into ARH of a Pomc-Cre_BL mouse, the tracer Cre-dependent (64% of the injection in ARH) labelled axons in AAA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 263369222

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112307046, an anterograde tracer injected into PIR of a wild-type mouse (76% of the injection in PIR) labelled axons in CEA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 112307046

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PMv (Ventral premammillary nucleus) MBA:1004 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in PMv (projection density 0.092).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

Made by an adapter reading a database (allen-connectivity@1.3.0).

MPN (Medial preoptic nucleus) MBA:515 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120280191, an anterograde tracer injected into MPN of a wild-type mouse (37% of the injection in MPN) labelled axons in CEA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 120280191

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 303708513, an anterograde tracer injected into VMH of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (29% of the injection in VMH) labelled axons in COAa (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 303708513

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to STN (Subthalamic nucleus) MBA:470 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in STN (projection density 0.127).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

Made by an adapter reading a database (allen-connectivity@1.3.0).

PB (Parabrachial nucleus) MBA:867 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183901489, an anterograde tracer injected into PB of a Chat-IRES-Cre-neo mouse, the tracer Cre-dependent (89% of the injection in PB) labelled axons in CEA (projection density 0.052).

Allen Mouse Brain Connectivity Atlas, experiment 183901489

Made by an adapter reading a database (allen-connectivity@1.3.0).

BST (Bed nuclei of the stria terminalis) MBA:351 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176886238, an anterograde tracer injected into BST of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in BST) labelled axons in BMA (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 176886238

Made by an adapter reading a database (allen-connectivity@1.3.0).

CLA (Claustrum) MBA:583 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 485903475, an anterograde tracer injected into CLA of a Gnb4-IRES2-Cre mouse, the tracer Cre-dependent (40% of the injection in CLA) labelled axons in COAp (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 485903475

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PPY (Parapyramidal nucleus) MBA:1069 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in PPY (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

Made by an adapter reading a database (allen-connectivity@1.3.0).

ILA (Infralimbic area) MBA:44 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 283019341, an anterograde tracer injected into ILA of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (42% of the injection in ILA) labelled axons in LA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 283019341

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to LSv (Lateral septal nucleus, ventral part) MBA:266 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in LSv (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VTA (Ventral tegmental area) MBA:749 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in VTA (projection density 0.069).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).