A mesoscale connectome of the mouse brain

MEA (Medial amygdalar nucleus) MBA:403 projects to ECT (Ectorhinal area) MBA:895 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in ECT (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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PIR (Piriform area) MBA:961 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 131068390, an anterograde tracer injected into PIR of a wild-type mouse (95% of the injection in PIR) labelled axons in CEA (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 131068390

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CEA (Central amygdalar nucleus) MBA:536 projects to PAG (Periaqueductal gray) MBA:795 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 241279261, an anterograde tracer injected into CEA of a Tac2-IRES2-Cre mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in PAG (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 241279261

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in BA (projection density 0.149).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278510903, an anterograde tracer injected into PVT of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (51% of the injection in PVT) labelled axons in COAp (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 278510903

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MEA (Medial amygdalar nucleus) MBA:403 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286303000, an anterograde tracer injected into MEA of a Slc6a3-Cre mouse, the tracer Cre-dependent (97% of the injection in MEA) labelled axons in IA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 286303000

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SI (Substantia innominata) MBA:342 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 147632458, an anterograde tracer injected into SI of a wild-type mouse (45% of the injection in SI) labelled axons in MEA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 147632458

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ENTl (Entorhinal area, lateral part) MBA:918 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 640081415, an anterograde tracer injected into ENTl of a wild-type mouse (84% of the injection in ENTl) labelled axons in LA (projection density 0.062).

Allen Mouse Brain Connectivity Atlas, experiment 640081415

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146984209, an anterograde tracer injected into PIR of a wild-type mouse (62% of the injection in PIR) labelled axons in MEA (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 146984209

Made by an adapter reading a database (allen-connectivity@1.3.0).

VTA (Ventral tegmental area) MBA:749 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127867804, an anterograde tracer injected into VTA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (22% of the injection in VTA) labelled axons in AAA (projection density 0.101).

Allen Mouse Brain Connectivity Atlas, experiment 127867804

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to FRP (Frontal pole, cerebral cortex) MBA:184 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in FRP (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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ARH (Arcuate hypothalamic nucleus) MBA:223 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263369222, an anterograde tracer injected into ARH of a Pomc-Cre_BL mouse, the tracer Cre-dependent (64% of the injection in ARH) labelled axons in IA (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 263369222

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146660293, an anterograde tracer injected into AHN of a wild-type mouse (28% of the injection in AHN) labelled axons in BMA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 146660293

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to SCH (Suprachiasmatic nucleus) MBA:286 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in SCH (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to FS (Fundus of striatum) MBA:998 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in FS (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

Made by an adapter reading a database (allen-connectivity@1.3.0).

AAA (Anterior amygdalar area) MBA:23 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in BA (projection density 0.076).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

PB (Parabrachial nucleus) MBA:867 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301016900, an anterograde tracer injected into PB of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (61% of the injection in PB) labelled axons in AAA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 301016900

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to MPN (Medial preoptic nucleus) MBA:515 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267813932, an anterograde tracer injected into BMA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (38% of the injection in BMA) labelled axons in MPN (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 267813932

Made by an adapter reading a database (allen-connectivity@1.3.0).

SGN (Suprageniculate nucleus) MBA:325 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182805258, an anterograde tracer injected into SGN of a Vipr2-Cre_KE2 mouse, the tracer Cre-dependent (30% of the injection in SGN) labelled axons in IA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 182805258

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SBPV (Subparaventricular zone) MBA:347 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293469501, an anterograde tracer injected into MEA of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (77% of the injection in MEA) labelled axons in SBPV (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 293469501

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to ZI (Zona incerta) MBA:797 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in ZI (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

Made by an adapter reading a database (allen-connectivity@1.3.0).

VTA (Ventral tegmental area) MBA:749 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120572378, an anterograde tracer injected into VTA of a wild-type mouse (10% of the injection in VTA) labelled axons in CEA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 120572378

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to AON (Anterior olfactory nucleus) MBA:159 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in AON (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to NLOT (Nucleus of the lateral olfactory tract) MBA:619 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in NLOT (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to RCH (Retrochiasmatic area) MBA:173 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in RCH (projection density 0.085).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to TMv (Tuberomammillary nucleus, ventral part) MBA:1 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in TMv (projection density 0.073).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267540168, an anterograde tracer injected into VMH of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (56% of the injection in VMH) labelled axons in LA (projection density 0.179).

Allen Mouse Brain Connectivity Atlas, experiment 267540168

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PAA (Piriform-amygdalar area) MBA:788 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 122641078, an anterograde tracer injected into PAA of a wild-type mouse (48% of the injection in PAA) labelled axons in TR (projection density 0.164).

Allen Mouse Brain Connectivity Atlas, experiment 122641078

Made by an adapter reading a database (allen-connectivity@1.3.0).

ORBl (Orbital area, lateral part) MBA:723 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168164972, an anterograde tracer injected into ORBl of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (65% of the injection in ORBl) labelled axons in AAA (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 168164972

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VISC (Visceral area) MBA:677 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180436360, an anterograde tracer injected into VISC of a wild-type mouse (30% of the injection in VISC) labelled axons in BLA (projection density 0.224).

Allen Mouse Brain Connectivity Atlas, experiment 180436360

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to VMH (Ventromedial hypothalamic nucleus) MBA:693 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in VMH (projection density 0.331).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PST (Preparasubthalamic nucleus) MBA:356 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in PST (projection density 0.063).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to SI (Substantia innominata) MBA:342 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in SI (projection density 0.236).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183225124, an anterograde tracer injected into ENTl of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (80% of the injection in ENTl) labelled axons in LA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 183225124

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in PIL (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to EPv (Endopiriform nucleus, ventral part) MBA:966 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in EPv (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 478095541, an anterograde tracer injected into VMH of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (28% of the injection in VMH) labelled axons in AAA (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 478095541

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in AAA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in IA (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to ACB (Nucleus accumbens) MBA:56 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277710753, an anterograde tracer injected into BLA of a wild-type mouse (49% of the injection in BLA) labelled axons in ACB (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 277710753

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to IMD (Intermediodorsal nucleus of the thalamus) MBA:59 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in IMD (projection density 0.198).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127139568, an anterograde tracer injected into ENTm of a wild-type mouse (56% of the injection in ENTm) labelled axons in PA (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 127139568

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SPFp (Subparafascicular nucleus, parvicellular part) MBA:422 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in SPFp (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

Made by an adapter reading a database (allen-connectivity@1.3.0).

SNr (Substantia nigra, reticular part) MBA:381 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 478096249, an anterograde tracer injected into SNr of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (41% of the injection in SNr) labelled axons in AAA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 478096249

Made by an adapter reading a database (allen-connectivity@1.3.0).

AAA (Anterior amygdalar area) MBA:23 projects to TU (Tuberal nucleus) MBA:614 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in TU (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 506117918, an anterograde tracer injected into PIR of a Gpr26-Cre_KO250 mouse, the tracer Cre-dependent (87% of the injection in PIR) labelled axons in BA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 506117918

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to ADP (Anterodorsal preoptic nucleus) MBA:72 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in ADP (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVa (Periventricular hypothalamic nucleus, anterior part) MBA:30 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PVa (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to CM (Central medial nucleus of the thalamus) MBA:599 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in CM (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to NDB (Diagonal band nucleus) MBA:596 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in NDB (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

Made by an adapter reading a database (allen-connectivity@1.3.0).