A mesoscale connectome of the mouse brain

TT (Taenia tecta) MBA:589 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 133286030, an anterograde tracer injected into TT of a wild-type mouse (43% of the injection in TT) labelled axons in LA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 133286030

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MPN (Medial preoptic nucleus) MBA:515 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 287246555, an anterograde tracer injected into MPN of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (36% of the injection in MPN) labelled axons in PA (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 287246555

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CEA (Central amygdalar nucleus) MBA:536 projects to ACVII (Accessory facial motor nucleus) MBA:576 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in ACVII (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

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CEA (Central amygdalar nucleus) MBA:536 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in BA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PS (Parastrial nucleus) MBA:1109 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in PS (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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MM (Medial mammillary nucleus) MBA:491 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158314987, an anterograde tracer injected into MM of a wild-type mouse (26% of the injection in MM) labelled axons in BLA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 158314987

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to SH (Septohippocampal nucleus) MBA:333 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in SH (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to ACAd (Anterior cingulate area, dorsal part) MBA:39 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in ACAd (projection density 0.105).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277854208, an anterograde tracer injected into VMH of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (39% of the injection in VMH) labelled axons in AAA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 277854208

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PA (Posterior amygdalar nucleus) MBA:780 projects to FS (Fundus of striatum) MBA:998 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304721447, an anterograde tracer injected into PA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (69% of the injection in PA) labelled axons in FS (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 304721447

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CEA (Central amygdalar nucleus) MBA:536 projects to SSp-un (Primary somatosensory area, unassigned) MBA:182305689 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in SSp-un (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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AAA (Anterior amygdalar area) MBA:23 projects to PERI (Perirhinal area) MBA:922 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in PERI (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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MEA (Medial amygdalar nucleus) MBA:403 projects to PVpo (Periventricular hypothalamic nucleus, preoptic part) MBA:133 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in PVpo (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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AAA (Anterior amygdalar area) MBA:23 projects to LH (Lateral habenula) MBA:186 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in LH (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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SUB (Subiculum) MBA:502 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127222723, an anterograde tracer injected into SUB of a wild-type mouse (30% of the injection in SUB) labelled axons in TR (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 127222723

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to NDB (Diagonal band nucleus) MBA:596 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in NDB (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

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SUB (Subiculum) MBA:502 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 152994878, an anterograde tracer injected into SUB of a wild-type mouse (58% of the injection in SUB) labelled axons in BMA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 152994878

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DP (Dorsal peduncular area) MBA:814 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112597496, an anterograde tracer injected into DP of a wild-type mouse (68% of the injection in DP) labelled axons in CEA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 112597496

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MEA (Medial amygdalar nucleus) MBA:403 projects to PMd (Dorsal premammillary nucleus) MBA:980 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286303000, an anterograde tracer injected into MEA of a Slc6a3-Cre mouse, the tracer Cre-dependent (97% of the injection in MEA) labelled axons in PMd (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 286303000

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MEA (Medial amygdalar nucleus) MBA:403 projects to RR (Midbrain reticular nucleus, retrorubral area) MBA:246 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in RR (projection density 0.073).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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MRN (Midbrain reticular nucleus) MBA:128 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 174583904, an anterograde tracer injected into MRN of a wild-type mouse (25% of the injection in MRN) labelled axons in CEA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 174583904

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VISC (Visceral area) MBA:677 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180436360, an anterograde tracer injected into VISC of a wild-type mouse (30% of the injection in VISC) labelled axons in BA (projection density 0.074).

Allen Mouse Brain Connectivity Atlas, experiment 180436360

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MEA (Medial amygdalar nucleus) MBA:403 projects to SPFp (Subparafascicular nucleus, parvicellular part) MBA:422 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in SPFp (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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PIR (Piriform area) MBA:961 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 310439724, an anterograde tracer injected into PIR of a Cux2-CreERT2 mouse, the tracer Cre-dependent (72% of the injection in PIR) labelled axons in AAA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 310439724

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120281646, an anterograde tracer injected into CEA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (98% of the injection in CEA) labelled axons in IA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 120281646

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 299244730, an anterograde tracer injected into BLA of a Efr3a-Cre_NO108 mouse, the tracer Cre-dependent (26% of the injection in BLA) labelled axons in COAa (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 299244730

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CEA (Central amygdalar nucleus) MBA:536 projects to PSTN (Parasubthalamic nucleus) MBA:364 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181889764, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (55% of the injection in CEA) labelled axons in PSTN (projection density 0.096).

Allen Mouse Brain Connectivity Atlas, experiment 181889764

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to ProS (Prosubiculum) MBA:484682470 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in ProS (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to OT (Olfactory tubercle) MBA:754 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in OT (projection density 0.205).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to ISN (Inferior salivatory nucleus) MBA:106 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 241279261, an anterograde tracer injected into CEA of a Tac2-IRES2-Cre mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in ISN (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 241279261

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MEA (Medial amygdalar nucleus) MBA:403 projects to BST (Bed nuclei of the stria terminalis) MBA:351 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in BST (projection density 0.137).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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TT (Taenia tecta) MBA:589 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 133286030, an anterograde tracer injected into TT of a wild-type mouse (43% of the injection in TT) labelled axons in COAa (projection density 0.075).

Allen Mouse Brain Connectivity Atlas, experiment 133286030

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to V (Motor nucleus of trigeminal) MBA:621 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in V (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

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LHA (Lateral hypothalamic area) MBA:194 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113313632, an anterograde tracer injected into LHA of a wild-type mouse (20% of the injection in LHA) labelled axons in CEA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 113313632

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180674463, an anterograde tracer injected into AHN of a wild-type mouse (24% of the injection in AHN) labelled axons in AAA (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 180674463

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SPA (Subparafascicular area) MBA:609 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in SPA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SubG (Subgeniculate nucleus) MBA:321 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in SubG (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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DR (Dorsal nucleus raphe) MBA:872 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 128055110, an anterograde tracer injected into DR of a Slc6a4-Cre_ET33 mouse, the tracer Cre-dependent (65% of the injection in DR) labelled axons in IA (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 128055110

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TU (Tuberal nucleus) MBA:614 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112228391, an anterograde tracer injected into TU of a wild-type mouse (31% of the injection in TU) labelled axons in MEA (projection density 0.048).

Allen Mouse Brain Connectivity Atlas, experiment 112228391

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176886958, an anterograde tracer injected into VMH of a Esr1-2A-Cre mouse, the tracer Cre-dependent (33% of the injection in VMH) labelled axons in BMA (projection density 0.062).

Allen Mouse Brain Connectivity Atlas, experiment 176886958

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CEA (Central amygdalar nucleus) MBA:536 projects to STN (Subthalamic nucleus) MBA:470 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in STN (projection density 0.083).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PS (Parastrial nucleus) MBA:1109 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in PS (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

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IPN (Interpeduncular nucleus) MBA:100 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267538735, an anterograde tracer injected into IPN of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (20% of the injection in IPN) labelled axons in CEA (projection density 0.091).

Allen Mouse Brain Connectivity Atlas, experiment 267538735

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CA1 (Field CA1) MBA:382 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286610216, an anterograde tracer injected into CA1 of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (83% of the injection in CA1) labelled axons in BMA (projection density 0.112).

Allen Mouse Brain Connectivity Atlas, experiment 286610216

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MEA (Medial amygdalar nucleus) MBA:403 projects to VMH (Ventromedial hypothalamic nucleus) MBA:693 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in VMH (projection density 0.101).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PSTN (Parasubthalamic nucleus) MBA:364 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in PSTN (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VMPO (Ventromedial preoptic nucleus) MBA:576073699 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in VMPO (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to DR (Dorsal nucleus raphe) MBA:872 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in DR (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AMB (Nucleus ambiguus) MBA:135 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in AMB (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

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SI (Substantia innominata) MBA:342 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 138058320, an anterograde tracer injected into SI of a wild-type mouse (48% of the injection in SI) labelled axons in LA (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 138058320

Made by an adapter reading a database (allen-connectivity@1.3.0).