A mesoscale connectome of the mouse brain

AId (Agranular insular area, dorsal part) MBA:104 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264076854, an anterograde tracer injected into AId of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (61% of the injection in AId) labelled axons in CEA (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 264076854

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MEA (Medial amygdalar nucleus) MBA:403 projects to LSr (Lateral septal nucleus, rostral (rostroventral) part) MBA:258 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in LSr (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

PH (Posterior hypothalamic nucleus) MBA:946 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176898557, an anterograde tracer injected into PH of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in PH) labelled axons in PA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 176898557

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DP (Dorsal peduncular area) MBA:814 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112597496, an anterograde tracer injected into DP of a wild-type mouse (68% of the injection in DP) labelled axons in IA (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 112597496

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PIR (Piriform area) MBA:961 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 298720898, an anterograde tracer injected into PIR of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (63% of the injection in PIR) labelled axons in BA (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 298720898

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CEA (Central amygdalar nucleus) MBA:536 projects to PAS (Parasolitary nucleus) MBA:859 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in PAS (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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PAA (Piriform-amygdalar area) MBA:788 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 122641078, an anterograde tracer injected into PAA of a wild-type mouse (48% of the injection in PAA) labelled axons in CEA (projection density 0.131).

Allen Mouse Brain Connectivity Atlas, experiment 122641078

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LSr (Lateral septal nucleus, rostral (rostroventral) part) MBA:258 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293434703, an anterograde tracer injected into LSr of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (32% of the injection in LSr) labelled axons in AAA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 293434703

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to SCH (Suprachiasmatic nucleus) MBA:286 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in SCH (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SNr (Substantia nigra, reticular part) MBA:381 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in SNr (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in LA (projection density 0.129).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

Made by an adapter reading a database (allen-connectivity@1.3.0).

AHN (Anterior hypothalamic nucleus) MBA:88 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126116142, an anterograde tracer injected into AHN of a wild-type mouse (32% of the injection in AHN) labelled axons in PA (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 126116142

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to STN (Subthalamic nucleus) MBA:470 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in STN (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to GPe (Globus pallidus, external segment) MBA:1022 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277710753, an anterograde tracer injected into BLA of a wild-type mouse (49% of the injection in BLA) labelled axons in GPe (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 277710753

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to MEPO (Median preoptic nucleus) MBA:452 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in MEPO (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to Acs5 (Accessory trigeminal nucleus) MBA:549009219 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in Acs5 (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267150949, an anterograde tracer injected into COAp of a Slc17a7-IRES2-Cre mouse, the tracer Cre-dependent (53% of the injection in COAp) labelled axons in SO (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 267150949

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to PRE (Presubiculum) MBA:1084 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in PRE (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

Made by an adapter reading a database (allen-connectivity@1.3.0).

ORBl (Orbital area, lateral part) MBA:723 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170721670, an anterograde tracer injected into ORBl of a wild-type mouse (70% of the injection in ORBl) labelled axons in CEA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 170721670

Made by an adapter reading a database (allen-connectivity@1.3.0).

ZI (Zona incerta) MBA:797 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126190743, an anterograde tracer injected into ZI of a wild-type mouse (45% of the injection in ZI) labelled axons in AAA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 126190743

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in BLA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

Made by an adapter reading a database (allen-connectivity@1.3.0).

ARH (Arcuate hypothalamic nucleus) MBA:223 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175738378, an anterograde tracer injected into ARH of a Pomc-Cre_BL mouse, the tracer Cre-dependent (44% of the injection in ARH) labelled axons in CEA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 175738378

Made by an adapter reading a database (allen-connectivity@1.3.0).

TR (Postpiriform transition area) MBA:566 projects to ACB (Nucleus accumbens) MBA:56 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126653015, an anterograde tracer injected into TR of a wild-type mouse (99% of the injection in TR) labelled axons in ACB (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 126653015

Made by an adapter reading a database (allen-connectivity@1.3.0).

RE (Nucleus of reuniens) MBA:181 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175019536, an anterograde tracer injected into RE of a wild-type mouse (17% of the injection in RE) labelled axons in IA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 175019536

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to IAM (Interanteromedial nucleus of the thalamus) MBA:1120 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in IAM (projection density 0.064).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SPA (Subparafascicular area) MBA:609 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in SPA (projection density 0.091).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to TU (Tuberal nucleus) MBA:614 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in TU (projection density 0.207).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

Made by an adapter reading a database (allen-connectivity@1.3.0).

SUB (Subiculum) MBA:502 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 506426778, an anterograde tracer injected into SUB of a Gpr26-Cre_KO250 mouse, the tracer Cre-dependent (52% of the injection in SUB) labelled axons in TR (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 506426778

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to BAC (Bed nucleus of the anterior commissure) MBA:287 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181889764, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (55% of the injection in CEA) labelled axons in BAC (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 181889764

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to VLPO (Ventrolateral preoptic nucleus) MBA:689 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in VLPO (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267813932, an anterograde tracer injected into BMA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (38% of the injection in BMA) labelled axons in COAp (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 267813932

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to LHA (Lateral hypothalamic area) MBA:194 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in LHA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PARN (Parvicellular reticular nucleus) MBA:852 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in PARN (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to PL (Prelimbic area) MBA:972 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in PL (projection density 0.269).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

Made by an adapter reading a database (allen-connectivity@1.3.0).

TU (Tuberal nucleus) MBA:614 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176888661, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (40% of the injection in TU) labelled axons in COAa (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 176888661

Made by an adapter reading a database (allen-connectivity@1.3.0).

RE (Nucleus of reuniens) MBA:181 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265286700, an anterograde tracer injected into RE of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (49% of the injection in RE) labelled axons in COAp (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 265286700

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to LPO (Lateral preoptic area) MBA:226 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in LPO (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

Made by an adapter reading a database (allen-connectivity@1.3.0).

CP (Caudoputamen) MBA:672 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 513775257, an anterograde tracer injected into CP of a Ntng2-IRES2-Cre mouse, the tracer Cre-dependent (36% of the injection in CP) labelled axons in BA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 513775257

Made by an adapter reading a database (allen-connectivity@1.3.0).

LHA (Lateral hypothalamic area) MBA:194 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278508779, an anterograde tracer injected into LHA of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (42% of the injection in LHA) labelled axons in IA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 278508779

Made by an adapter reading a database (allen-connectivity@1.3.0).

BST (Bed nuclei of the stria terminalis) MBA:351 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305645843, an anterograde tracer injected into BST of a Htr3a-Cre_NO152 mouse, the tracer Cre-dependent (90% of the injection in BST) labelled axons in PA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 305645843

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304694870, an anterograde tracer injected into MEA of a Nos1-CreERT2 mouse, the tracer Cre-dependent (100% of the injection in MEA) labelled axons in DMH (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 304694870

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVp (Periventricular hypothalamic nucleus, posterior part) MBA:126 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in PVp (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to ARH (Arcuate hypothalamic nucleus) MBA:223 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in ARH (projection density 0.052).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to MOs (Secondary motor area) MBA:993 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in MOs (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to BST (Bed nuclei of the stria terminalis) MBA:351 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277480964, an anterograde tracer injected into COAp of a wild-type mouse (47% of the injection in COAp) labelled axons in BST (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 277480964

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to ILA (Infralimbic area) MBA:44 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in ILA (projection density 0.087).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to RCH (Retrochiasmatic area) MBA:173 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in RCH (projection density 0.083).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to VLPO (Ventrolateral preoptic nucleus) MBA:689 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in VLPO (projection density 0.064).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SUM (Supramammillary nucleus) MBA:525 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in SUM (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 292211026, an anterograde tracer injected into VMH of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (47% of the injection in VMH) labelled axons in COAa (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 292211026

Made by an adapter reading a database (allen-connectivity@1.3.0).