A mesoscale connectome of the mouse brain

PAG (Periaqueductal gray) MBA:795 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 160538548, an anterograde tracer injected into PAG of a Slc6a3-Cre mouse, the tracer Cre-dependent (78% of the injection in PAG) labelled axons in CEA (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 160538548

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175106769, an anterograde tracer injected into VMH of a wild-type mouse (45% of the injection in VMH) labelled axons in IA (projection density 0.071).

Allen Mouse Brain Connectivity Atlas, experiment 175106769

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CEA (Central amygdalar nucleus) MBA:536 projects to RR (Midbrain reticular nucleus, retrorubral area) MBA:246 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in RR (projection density 0.064).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to TMd (Tuberomammillary nucleus, dorsal part) MBA:1126 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in TMd (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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MEA (Medial amygdalar nucleus) MBA:403 projects to RE (Nucleus of reuniens) MBA:181 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in RE (projection density 0.102).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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CEA (Central amygdalar nucleus) MBA:536 projects to GU (Gustatory areas) MBA:1057 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in GU (projection density 0.057).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PD (Posterodorsal preoptic nucleus) MBA:914 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in PD (projection density 0.074).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to VMPO (Ventromedial preoptic nucleus) MBA:576073699 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in VMPO (projection density 0.057).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to RPA (Nucleus raphe pallidus) MBA:230 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 273028004, an anterograde tracer injected into BMA of a wild-type mouse (68% of the injection in BMA) labelled axons in RPA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 273028004

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PT (Parataenial nucleus) MBA:15 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159432479, an anterograde tracer injected into PT of a Cck-IRES-Cre mouse, the tracer Cre-dependent (30% of the injection in PT) labelled axons in IA (projection density 0.068).

Allen Mouse Brain Connectivity Atlas, experiment 159432479

Made by an adapter reading a database (allen-connectivity@1.3.0).

NLOT (Nucleus of the lateral olfactory tract) MBA:619 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 294174996, an anterograde tracer injected into NLOT of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (97% of the injection in NLOT) labelled axons in CEA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 294174996

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to GU (Gustatory areas) MBA:1057 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277710753, an anterograde tracer injected into BLA of a wild-type mouse (49% of the injection in BLA) labelled axons in GU (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 277710753

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to LSv (Lateral septal nucleus, ventral part) MBA:266 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in LSv (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

BST (Bed nuclei of the stria terminalis) MBA:351 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 204832917, an anterograde tracer injected into BST of a Crh-IRES-Cre_ZJH mouse, the tracer Cre-dependent (45% of the injection in BST) labelled axons in LA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 204832917

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AIp (Agranular insular area, posterior part) MBA:111 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272827141, an anterograde tracer injected into AIp of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (53% of the injection in AIp) labelled axons in TR (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 272827141

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to AD (Anterodorsal nucleus) MBA:64 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in AD (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

ORBl (Orbital area, lateral part) MBA:723 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 156741826, an anterograde tracer injected into ORBl of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (65% of the injection in ORBl) labelled axons in AAA (projection density 0.055).

Allen Mouse Brain Connectivity Atlas, experiment 156741826

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 313325371, an anterograde tracer injected into VMH of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (18% of the injection in VMH) labelled axons in PA (projection density 0.158).

Allen Mouse Brain Connectivity Atlas, experiment 313325371

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PT (Parataenial nucleus) MBA:15 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PT (projection density 0.105).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PSTN (Parasubthalamic nucleus) MBA:364 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in PSTN (projection density 0.055).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to MRN (Midbrain reticular nucleus) MBA:128 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in MRN (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

Made by an adapter reading a database (allen-connectivity@1.3.0).

MS (Medial septal nucleus) MBA:564 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 303580293, an anterograde tracer injected into MS of a Gad2-IRES-Cre mouse, the tracer Cre-dependent (54% of the injection in MS) labelled axons in PA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 303580293

Made by an adapter reading a database (allen-connectivity@1.3.0).

PH (Posterior hypothalamic nucleus) MBA:946 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175374275, an anterograde tracer injected into PH of a wild-type mouse (32% of the injection in PH) labelled axons in LA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 175374275

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PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 586054741, an anterograde tracer injected into PIL of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (49% of the injection in PIL) labelled axons in IA (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 586054741

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MEA (Medial amygdalar nucleus) MBA:403 projects to PP (Peripeduncular nucleus) MBA:1044 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in PP (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in COAp (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264319363, an anterograde tracer injected into VMH of a Esr1-2A-Cre mouse, the tracer Cre-dependent (29% of the injection in VMH) labelled axons in BMA (projection density 0.096).

Allen Mouse Brain Connectivity Atlas, experiment 264319363

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PD (Posterodorsal preoptic nucleus) MBA:914 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in PD (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to NPC (Nucleus of the posterior commissure) MBA:634 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in NPC (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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CEA (Central amygdalar nucleus) MBA:536 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in SO (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

Made by an adapter reading a database (allen-connectivity@1.3.0).

LA (Lateral amygdalar nucleus) MBA:131 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126863090, an anterograde tracer injected into LA of a Kcnc2-Cre mouse, the tracer Cre-dependent (39% of the injection in LA) labelled axons in COAp (projection density 0.055).

Allen Mouse Brain Connectivity Atlas, experiment 126863090

Made by an adapter reading a database (allen-connectivity@1.3.0).

PMv (Ventral premammillary nucleus) MBA:1004 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 520342605, an anterograde tracer injected into PMv of a Hdc-Cre_IM1 mouse, the tracer Cre-dependent (17% of the injection in PMv) labelled axons in CEA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 520342605

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146984209, an anterograde tracer injected into PIR of a wild-type mouse (62% of the injection in PIR) labelled axons in PA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 146984209

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PVHd (Paraventricular hypothalamic nucleus, descending division) MBA:63 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in PVHd (projection density 0.060).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SPA (Subparafascicular area) MBA:609 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in SPA (projection density 0.065).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in PA (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PS (Parastrial nucleus) MBA:1109 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in PS (projection density 0.081).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to AHN (Anterior hypothalamic nucleus) MBA:88 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in AHN (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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PA (Posterior amygdalar nucleus) MBA:780 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304721447, an anterograde tracer injected into PA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (69% of the injection in PA) labelled axons in MPO (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 304721447

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114249084, an anterograde tracer injected into COAp of a wild-type mouse (100% of the injection in COAp) labelled axons in MEA (projection density 0.262).

Allen Mouse Brain Connectivity Atlas, experiment 114249084

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TU (Tuberal nucleus) MBA:614 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264248605, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (36% of the injection in TU) labelled axons in PA (projection density 0.079).

Allen Mouse Brain Connectivity Atlas, experiment 264248605

Made by an adapter reading a database (allen-connectivity@1.3.0).

VTA (Ventral tegmental area) MBA:749 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127651139, an anterograde tracer injected into VTA of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (27% of the injection in VTA) labelled axons in COAa (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 127651139

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to ENTl (Entorhinal area, lateral part) MBA:918 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in ENTl (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to TMv (Tuberomammillary nucleus, ventral part) MBA:1 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304694870, an anterograde tracer injected into MEA of a Nos1-CreERT2 mouse, the tracer Cre-dependent (100% of the injection in MEA) labelled axons in TMv (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 304694870

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to TMd (Tuberomammillary nucleus, dorsal part) MBA:1126 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in TMd (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

Made by an adapter reading a database (allen-connectivity@1.3.0).

DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304617742, an anterograde tracer injected into DMH of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (12% of the injection in DMH) labelled axons in COAa (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 304617742

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to MRN (Midbrain reticular nucleus) MBA:128 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181889764, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (55% of the injection in CEA) labelled axons in MRN (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 181889764

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PPN (Pedunculopontine nucleus) MBA:1052 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in PPN (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to AON (Anterior olfactory nucleus) MBA:159 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in AON (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PST (Preparasubthalamic nucleus) MBA:356 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in PST (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).