A mesoscale connectome of the mouse brain

AHN (Anterior hypothalamic nucleus) MBA:88 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180674463, an anterograde tracer injected into AHN of a wild-type mouse (24% of the injection in AHN) labelled axons in CEA (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 180674463

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MD (Mediodorsal nucleus of thalamus) MBA:362 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114291646, an anterograde tracer injected into MD of a wild-type mouse (45% of the injection in MD) labelled axons in BLA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 114291646

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MEA (Medial amygdalar nucleus) MBA:403 projects to PVH (Paraventricular hypothalamic nucleus) MBA:38 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in PVH (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126116142, an anterograde tracer injected into AHN of a wild-type mouse (32% of the injection in AHN) labelled axons in MEA (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 126116142

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to ACB (Nucleus accumbens) MBA:56 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in ACB (projection density 0.074).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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BST (Bed nuclei of the stria terminalis) MBA:351 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 204832917, an anterograde tracer injected into BST of a Crh-IRES-Cre_ZJH mouse, the tracer Cre-dependent (45% of the injection in BST) labelled axons in BA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 204832917

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CEA (Central amygdalar nucleus) MBA:536 projects to PPN (Pedunculopontine nucleus) MBA:1052 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181889764, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (55% of the injection in CEA) labelled axons in PPN (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 181889764

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to RCH (Retrochiasmatic area) MBA:173 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 508775240, an anterograde tracer injected into BMA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (61% of the injection in BMA) labelled axons in RCH (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 508775240

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CEA (Central amygdalar nucleus) MBA:536 projects to I5 (Intertrigeminal nucleus) MBA:549009227 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in I5 (projection density 0.069).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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RE (Nucleus of reuniens) MBA:181 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 204832205, an anterograde tracer injected into RE of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (28% of the injection in RE) labelled axons in CEA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 204832205

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AUDd (Dorsal auditory area) MBA:1011 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in AUDd (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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CEA (Central amygdalar nucleus) MBA:536 projects to PS (Parastrial nucleus) MBA:1109 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in PS (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

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MEA (Medial amygdalar nucleus) MBA:403 projects to IF (Interfascicular nucleus raphe) MBA:12 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in IF (projection density 0.052).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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AAA (Anterior amygdalar area) MBA:23 projects to AON (Anterior olfactory nucleus) MBA:159 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in AON (projection density 0.099).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to SI (Substantia innominata) MBA:342 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in SI (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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ENTl (Entorhinal area, lateral part) MBA:918 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180297139, an anterograde tracer injected into ENTl of a wild-type mouse (93% of the injection in ENTl) labelled axons in COAp (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 180297139

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PIR (Piriform area) MBA:961 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 551350026, an anterograde tracer injected into PIR of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (73% of the injection in PIR) labelled axons in COAa (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 551350026

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PB (Parabrachial nucleus) MBA:867 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127469566, an anterograde tracer injected into PB of a wild-type mouse (53% of the injection in PB) labelled axons in AAA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 127469566

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CM (Central medial nucleus of the thalamus) MBA:599 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301538025, an anterograde tracer injected into CM of a Plxnd1-Cre_OG1 mouse, the tracer Cre-dependent (34% of the injection in CM) labelled axons in BLA (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 301538025

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AM (Anteromedial nucleus) MBA:127 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146658170, an anterograde tracer injected into AM of a wild-type mouse (43% of the injection in AM) labelled axons in IA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 146658170

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PSTN (Parasubthalamic nucleus) MBA:364 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in PSTN (projection density 0.172).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PIR (Piriform area) MBA:961 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114249084, an anterograde tracer injected into COAp of a wild-type mouse (100% of the injection in COAp) labelled axons in PIR (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 114249084

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MRN (Midbrain reticular nucleus) MBA:128 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 174583187, an anterograde tracer injected into MRN of a wild-type mouse (19% of the injection in MRN) labelled axons in COAa (projection density 0.083).

Allen Mouse Brain Connectivity Atlas, experiment 174583187

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MEA (Medial amygdalar nucleus) MBA:403 projects to MPN (Medial preoptic nucleus) MBA:515 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in MPN (projection density 0.094).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PH (Posterior hypothalamic nucleus) MBA:946 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in PH (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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MEA (Medial amygdalar nucleus) MBA:403 projects to DR (Dorsal nucleus raphe) MBA:872 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in DR (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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BST (Bed nuclei of the stria terminalis) MBA:351 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167026321, an anterograde tracer injected into BST of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (25% of the injection in BST) labelled axons in PA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 167026321

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MEA (Medial amygdalar nucleus) MBA:403 projects to SPFm (Subparafascicular nucleus, magnocellular part) MBA:414 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in SPFm (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to NDB (Diagonal band nucleus) MBA:596 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in NDB (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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MEA (Medial amygdalar nucleus) MBA:403 projects to TMv (Tuberomammillary nucleus, ventral part) MBA:1 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in TMv (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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ENTl (Entorhinal area, lateral part) MBA:918 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182794184, an anterograde tracer injected into ENTl of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (93% of the injection in ENTl) labelled axons in TR (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 182794184

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PVH (Paraventricular hypothalamic nucleus) MBA:38 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in PVH (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AOB (Accessory olfactory bulb) MBA:151 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170946889, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (55% of the injection in MEA) labelled axons in AOB (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 170946889

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MEA (Medial amygdalar nucleus) MBA:403 projects to ASO (Accessory supraoptic group) MBA:332 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in ASO (projection density 0.085).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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PSTN (Parasubthalamic nucleus) MBA:364 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264696942, an anterograde tracer injected into PSTN of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (25% of the injection in PSTN) labelled axons in IA (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 264696942

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MEA (Medial amygdalar nucleus) MBA:403 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in LA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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NDB (Diagonal band nucleus) MBA:596 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 177605425, an anterograde tracer injected into NDB of a Chat-IRES-Cre-neo mouse, the tracer Cre-dependent (62% of the injection in NDB) labelled axons in PA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 177605425

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PeF (Perifornical nucleus) MBA:576073704 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PeF (projection density 0.086).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to LT (Lateral terminal nucleus of the accessory optic tract) MBA:66 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in LT (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

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MEA (Medial amygdalar nucleus) MBA:403 projects to BST (Bed nuclei of the stria terminalis) MBA:351 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in BST (projection density 0.074).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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PAG (Periaqueductal gray) MBA:795 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272699357, an anterograde tracer injected into PAG of a Th-Cre_FI172 mouse, the tracer Cre-dependent (69% of the injection in PAG) labelled axons in BMA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 272699357

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SI (Substantia innominata) MBA:342 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in SI (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SBPV (Subparaventricular zone) MBA:347 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in SBPV (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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MEA (Medial amygdalar nucleus) MBA:403 projects to AVP (Anteroventral preoptic nucleus) MBA:263 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in AVP (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

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CEA (Central amygdalar nucleus) MBA:536 projects to P5 (Peritrigeminal zone) MBA:549009215 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in P5 (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to VLPO (Ventrolateral preoptic nucleus) MBA:689 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in VLPO (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in MPO (projection density 0.057).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

SI (Substantia innominata) MBA:342 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 302736304, an anterograde tracer injected into SI of a Gad2-IRES-Cre mouse, the tracer Cre-dependent (45% of the injection in SI) labelled axons in BA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 302736304

Made by an adapter reading a database (allen-connectivity@1.3.0).

BST (Bed nuclei of the stria terminalis) MBA:351 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176886238, an anterograde tracer injected into BST of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in BST) labelled axons in LA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 176886238

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PB (Parabrachial nucleus) MBA:867 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 292790567, an anterograde tracer injected into PB of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (58% of the injection in PB) labelled axons in AAA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 292790567

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