A mesoscale connectome of the mouse brain

CEA (Central amygdalar nucleus) MBA:536 projects to MT (Medial terminal nucleus of the accessory optic tract) MBA:58 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in MT (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

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PMv (Ventral premammillary nucleus) MBA:1004 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 294316542, an anterograde tracer injected into PMv of a Tac1-IRES2-Cre mouse, the tracer Cre-dependent (26% of the injection in PMv) labelled axons in BMA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 294316542

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to DP (Dorsal peduncular area) MBA:814 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in DP (projection density 0.110).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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AAA (Anterior amygdalar area) MBA:23 projects to MOB (Main olfactory bulb) MBA:507 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in MOB (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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MEA (Medial amygdalar nucleus) MBA:403 projects to TMd (Tuberomammillary nucleus, dorsal part) MBA:1126 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in TMd (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

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ACB (Nucleus accumbens) MBA:56 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167904966, an anterograde tracer injected into ACB of a Drd2-Cre_ER44 mouse, the tracer Cre-dependent (57% of the injection in ACB) labelled axons in AAA (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 167904966

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VTA (Ventral tegmental area) MBA:749 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127867804, an anterograde tracer injected into VTA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (22% of the injection in VTA) labelled axons in BLA (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 127867804

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to VTA (Ventral tegmental area) MBA:749 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in VTA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

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PT (Parataenial nucleus) MBA:15 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176897793, an anterograde tracer injected into PT of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (66% of the injection in PT) labelled axons in CEA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 176897793

Made by an adapter reading a database (allen-connectivity@1.3.0).

DP (Dorsal peduncular area) MBA:814 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112597496, an anterograde tracer injected into DP of a wild-type mouse (68% of the injection in DP) labelled axons in BLA (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 112597496

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MRN (Midbrain reticular nucleus) MBA:128 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113400134, an anterograde tracer injected into MRN of a wild-type mouse (17% of the injection in MRN) labelled axons in BLA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 113400134

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CEA (Central amygdalar nucleus) MBA:536 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in PA (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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PH (Posterior hypothalamic nucleus) MBA:946 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 268208632, an anterograde tracer injected into PH of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (21% of the injection in PH) labelled axons in MEA (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 268208632

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ECT (Ectorhinal area) MBA:895 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267150949, an anterograde tracer injected into COAp of a Slc17a7-IRES2-Cre mouse, the tracer Cre-dependent (53% of the injection in COAp) labelled axons in ECT (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 267150949

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267813932, an anterograde tracer injected into BMA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (38% of the injection in BMA) labelled axons in BA (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 267813932

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to IAM (Interanteromedial nucleus of the thalamus) MBA:1120 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in IAM (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in TR (projection density 0.065).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to NDB (Diagonal band nucleus) MBA:596 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in NDB (projection density 0.085).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

SI (Substantia innominata) MBA:342 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157659671, an anterograde tracer injected into SI of a wild-type mouse (45% of the injection in SI) labelled axons in IA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 157659671

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in IA (projection density 0.089).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

AIp (Agranular insular area, posterior part) MBA:111 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 485847695, an anterograde tracer injected into AIp of a Ntng2-IRES2-Cre mouse, the tracer Cre-dependent (68% of the injection in AIp) labelled axons in LA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 485847695

Made by an adapter reading a database (allen-connectivity@1.3.0).

CM (Central medial nucleus of the thalamus) MBA:599 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158841171, an anterograde tracer injected into CM of a wild-type mouse (17% of the injection in CM) labelled axons in IA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 158841171

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVH (Paraventricular hypothalamic nucleus) MBA:38 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 300888673, an anterograde tracer injected into PVH of a Tac1-IRES2-Cre mouse, the tracer Cre-dependent (26% of the injection in PVH) labelled axons in BMA (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 300888673

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to MEPO (Median preoptic nucleus) MBA:452 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in MEPO (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

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ENTl (Entorhinal area, lateral part) MBA:918 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182794184, an anterograde tracer injected into ENTl of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (93% of the injection in ENTl) labelled axons in LA (projection density 0.048).

Allen Mouse Brain Connectivity Atlas, experiment 182794184

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175106769, an anterograde tracer injected into VMH of a wild-type mouse (45% of the injection in VMH) labelled axons in COAa (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 175106769

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VMPO (Ventromedial preoptic nucleus) MBA:576073699 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in VMPO (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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CEA (Central amygdalar nucleus) MBA:536 projects to SNr (Substantia nigra, reticular part) MBA:381 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in SNr (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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VISC (Visceral area) MBA:677 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180074890, an anterograde tracer injected into VISC of a wild-type mouse (85% of the injection in VISC) labelled axons in COAa (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 180074890

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to LPO (Lateral preoptic area) MBA:226 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in LPO (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to LSv (Lateral septal nucleus, ventral part) MBA:266 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in LSv (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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AON (Anterior olfactory nucleus) MBA:159 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170949055, an anterograde tracer injected into AON of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (61% of the injection in AON) labelled axons in BMA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 170949055

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to MA (Magnocellular nucleus) MBA:298 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in MA (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127396051, an anterograde tracer injected into PIL of a wild-type mouse (32% of the injection in PIL) labelled axons in BMA (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 127396051

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to ENTl (Entorhinal area, lateral part) MBA:918 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in ENTl (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to CLA (Claustrum) MBA:583 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267150949, an anterograde tracer injected into COAp of a Slc17a7-IRES2-Cre mouse, the tracer Cre-dependent (53% of the injection in COAp) labelled axons in CLA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 267150949

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ILA (Infralimbic area) MBA:44 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in ILA (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

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CEA (Central amygdalar nucleus) MBA:536 projects to MA3 (Medial accesory oculomotor nucleus) MBA:549009211 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in MA3 (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PMd (Dorsal premammillary nucleus) MBA:980 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in PMd (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

Made by an adapter reading a database (allen-connectivity@1.3.0).

AAA (Anterior amygdalar area) MBA:23 projects to SPFm (Subparafascicular nucleus, magnocellular part) MBA:414 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in SPFm (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to FRP (Frontal pole, cerebral cortex) MBA:184 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in FRP (projection density 0.103).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112672974, an anterograde tracer injected into ENTm of a wild-type mouse (84% of the injection in ENTm) labelled axons in BLA (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 112672974

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184158996, an anterograde tracer injected into PVT of a Calb2-IRES-Cre mouse, the tracer Cre-dependent (42% of the injection in PVT) labelled axons in BLA (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 184158996

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AMB (Nucleus ambiguus) MBA:135 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in AMB (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183225124, an anterograde tracer injected into ENTl of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (80% of the injection in ENTl) labelled axons in COAa (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 183225124

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AHN (Anterior hypothalamic nucleus) MBA:88 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in AHN (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in COAa (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

Made by an adapter reading a database (allen-connectivity@1.3.0).

CA1 (Field CA1) MBA:382 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286610923, an anterograde tracer injected into CA1 of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (85% of the injection in CA1) labelled axons in CEA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 286610923

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264319363, an anterograde tracer injected into VMH of a Esr1-2A-Cre mouse, the tracer Cre-dependent (29% of the injection in VMH) labelled axons in TR (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 264319363

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to ASO (Accessory supraoptic group) MBA:332 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286303000, an anterograde tracer injected into MEA of a Slc6a3-Cre mouse, the tracer Cre-dependent (97% of the injection in MEA) labelled axons in ASO (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 286303000

Made by an adapter reading a database (allen-connectivity@1.3.0).