A mesoscale connectome of the mouse brain

BMA (Basomedial amygdalar nucleus) MBA:319 projects to ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in ENTm (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

Made by an adapter reading a database (allen-connectivity@1.3.0).

PB (Parabrachial nucleus) MBA:867 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183284388, an anterograde tracer injected into PB of a Calb2-IRES-Cre mouse, the tracer Cre-dependent (91% of the injection in PB) labelled axons in CEA (projection density 0.125).

Allen Mouse Brain Connectivity Atlas, experiment 183284388

Made by an adapter reading a database (allen-connectivity@1.3.0).

PA (Posterior amygdalar nucleus) MBA:780 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304721447, an anterograde tracer injected into PA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (69% of the injection in PA) labelled axons in LA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 304721447

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to ECT (Ectorhinal area) MBA:895 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in ECT (projection density 0.060).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

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ENTl (Entorhinal area, lateral part) MBA:918 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180297139, an anterograde tracer injected into ENTl of a wild-type mouse (93% of the injection in ENTl) labelled axons in CEA (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 180297139

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PST (Preparasubthalamic nucleus) MBA:356 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 241279261, an anterograde tracer injected into CEA of a Tac2-IRES2-Cre mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in PST (projection density 0.070).

Allen Mouse Brain Connectivity Atlas, experiment 241279261

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SNr (Substantia nigra, reticular part) MBA:381 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 100141993, an anterograde tracer injected into SNr of a wild-type mouse (95% of the injection in SNr) labelled axons in CEA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 100141993

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PT (Parataenial nucleus) MBA:15 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305449231, an anterograde tracer injected into PT of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (57% of the injection in PT) labelled axons in CEA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 305449231

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MEA (Medial amygdalar nucleus) MBA:403 projects to RT (Reticular nucleus of the thalamus) MBA:262 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in RT (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to RCH (Retrochiasmatic area) MBA:173 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in RCH (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in LA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to LSr (Lateral septal nucleus, rostral (rostroventral) part) MBA:258 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in LSr (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

VISC (Visceral area) MBA:677 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 174361746, an anterograde tracer injected into VISC of a wild-type mouse (49% of the injection in VISC) labelled axons in TR (projection density 0.101).

Allen Mouse Brain Connectivity Atlas, experiment 174361746

Made by an adapter reading a database (allen-connectivity@1.3.0).

MOs (Secondary motor area) MBA:993 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157710335, an anterograde tracer injected into MOs of a wild-type mouse (54% of the injection in MOs) labelled axons in CEA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 157710335

Made by an adapter reading a database (allen-connectivity@1.3.0).

PAG (Periaqueductal gray) MBA:795 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 287247978, an anterograde tracer injected into PAG of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (90% of the injection in PAG) labelled axons in BLA (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 287247978

Made by an adapter reading a database (allen-connectivity@1.3.0).

ILA (Infralimbic area) MBA:44 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286313491, an anterograde tracer injected into ILA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (52% of the injection in ILA) labelled axons in BLA (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 286313491

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to ENTl (Entorhinal area, lateral part) MBA:918 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in ENTl (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

PH (Posterior hypothalamic nucleus) MBA:946 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 164986046, an anterograde tracer injected into PH of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (40% of the injection in PH) labelled axons in IA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 164986046

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to ADP (Anterodorsal preoptic nucleus) MBA:72 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in ADP (projection density 0.081).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 506117918, an anterograde tracer injected into PIR of a Gpr26-Cre_KO250 mouse, the tracer Cre-dependent (87% of the injection in PIR) labelled axons in COAa (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 506117918

Made by an adapter reading a database (allen-connectivity@1.3.0).

VTA (Ventral tegmental area) MBA:749 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127651139, an anterograde tracer injected into VTA of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (27% of the injection in VTA) labelled axons in CEA (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 127651139

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VTA (Ventral tegmental area) MBA:749 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in VTA (projection density 0.076).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

ECT (Ectorhinal area) MBA:895 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180435652, an anterograde tracer injected into ECT of a wild-type mouse (38% of the injection in ECT) labelled axons in BLA (projection density 0.353).

Allen Mouse Brain Connectivity Atlas, experiment 180435652

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PS (Parastrial nucleus) MBA:1109 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PS (projection density 0.063).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in MPO (projection density 0.073).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PP (Peripeduncular nucleus) MBA:1044 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293469501, an anterograde tracer injected into MEA of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (77% of the injection in MEA) labelled axons in PP (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 293469501

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to ARH (Arcuate hypothalamic nucleus) MBA:223 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in ARH (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to LPO (Lateral preoptic area) MBA:226 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in LPO (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SPFp (Subparafascicular nucleus, parvicellular part) MBA:422 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in SPFp (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PP (Peripeduncular nucleus) MBA:1044 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in PP (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in TR (projection density 0.083).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AVPV (Anteroventral periventricular nucleus) MBA:272 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in AVPV (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in DMH (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301209502, an anterograde tracer injected into PVT of a Efr3a-Cre_NO108 mouse, the tracer Cre-dependent (48% of the injection in PVT) labelled axons in IA (projection density 0.068).

Allen Mouse Brain Connectivity Atlas, experiment 301209502

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to CA1 (Field CA1) MBA:382 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in CA1 (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to MRN (Midbrain reticular nucleus) MBA:128 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in MRN (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to TU (Tuberal nucleus) MBA:614 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293469501, an anterograde tracer injected into MEA of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (77% of the injection in MEA) labelled axons in TU (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 293469501

Made by an adapter reading a database (allen-connectivity@1.3.0).

PB (Parabrachial nucleus) MBA:867 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183284388, an anterograde tracer injected into PB of a Calb2-IRES-Cre mouse, the tracer Cre-dependent (91% of the injection in PB) labelled axons in COAa (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 183284388

Made by an adapter reading a database (allen-connectivity@1.3.0).

LA (Lateral amygdalar nucleus) MBA:131 projects to HATA (Hippocampo-amygdalar transition area) MBA:589508447 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126863090, an anterograde tracer injected into LA of a Kcnc2-Cre mouse, the tracer Cre-dependent (39% of the injection in LA) labelled axons in HATA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 126863090

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PR (Perireunensis nucleus) MBA:1077 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in PR (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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MPN (Medial preoptic nucleus) MBA:515 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120280191, an anterograde tracer injected into MPN of a wild-type mouse (37% of the injection in MPN) labelled axons in PA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 120280191

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to SPFm (Subparafascicular nucleus, magnocellular part) MBA:414 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in SPFm (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to TT (Taenia tecta) MBA:589 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in TT (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

LSv (Lateral septal nucleus, ventral part) MBA:266 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167654731, an anterograde tracer injected into LSv of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (21% of the injection in LSv) labelled axons in PA (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 167654731

Made by an adapter reading a database (allen-connectivity@1.3.0).

SI (Substantia innominata) MBA:342 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 138058320, an anterograde tracer injected into SI of a wild-type mouse (48% of the injection in SI) labelled axons in IA (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 138058320

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to FS (Fundus of striatum) MBA:998 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in FS (projection density 0.157).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

Made by an adapter reading a database (allen-connectivity@1.3.0).

BST (Bed nuclei of the stria terminalis) MBA:351 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 117312486, an anterograde tracer injected into BST of a wild-type mouse (83% of the injection in BST) labelled axons in BMA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 117312486

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to NDB (Diagonal band nucleus) MBA:596 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267150949, an anterograde tracer injected into COAp of a Slc17a7-IRES2-Cre mouse, the tracer Cre-dependent (53% of the injection in COAp) labelled axons in NDB (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 267150949

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ENTl (Entorhinal area, lateral part) MBA:918 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183225124, an anterograde tracer injected into ENTl of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (80% of the injection in ENTl) labelled axons in AAA (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 183225124

Made by an adapter reading a database (allen-connectivity@1.3.0).

VISpor (Postrhinal area) MBA:312782628 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 298178204, an anterograde tracer injected into VISpor of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (74% of the injection in VISpor) labelled axons in LA (projection density 0.154).

Allen Mouse Brain Connectivity Atlas, experiment 298178204

Made by an adapter reading a database (allen-connectivity@1.3.0).