A mesoscale connectome of the mouse brain

MEA (Medial amygdalar nucleus) MBA:403 projects to EPd (Endopiriform nucleus, dorsal part) MBA:952 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in EPd (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

MPN (Medial preoptic nucleus) MBA:515 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 287246555, an anterograde tracer injected into MPN of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (36% of the injection in MPN) labelled axons in IA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 287246555

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to EPd (Endopiriform nucleus, dorsal part) MBA:952 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in EPd (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 287028480, an anterograde tracer injected into ENTm of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (53% of the injection in ENTm) labelled axons in LA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 287028480

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MEA (Medial amygdalar nucleus) MBA:403 projects to PMd (Dorsal premammillary nucleus) MBA:980 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in PMd (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

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VISC (Visceral area) MBA:677 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180917660, an anterograde tracer injected into VISC of a wild-type mouse (60% of the injection in VISC) labelled axons in AAA (projection density 0.065).

Allen Mouse Brain Connectivity Atlas, experiment 180917660

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VISp (Primary visual area) MBA:385 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127138787, an anterograde tracer injected into VISp of a wild-type mouse (47% of the injection in VISp) labelled axons in LA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 127138787

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RE (Nucleus of reuniens) MBA:181 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 538833505, an anterograde tracer injected into RE of a Calb1-T2A-dgCre mouse, the tracer Cre-dependent (64% of the injection in RE) labelled axons in COAa (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 538833505

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to CLI (Central linear nucleus raphe) MBA:591 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in CLI (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

Made by an adapter reading a database (allen-connectivity@1.3.0).

MPO (Medial preoptic area) MBA:523 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158738180, an anterograde tracer injected into MPO of a wild-type mouse (27% of the injection in MPO) labelled axons in CEA (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 158738180

Made by an adapter reading a database (allen-connectivity@1.3.0).

CP (Caudoputamen) MBA:672 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 117317884, an anterograde tracer injected into CP of a wild-type mouse (38% of the injection in CP) labelled axons in BMA (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 117317884

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SNc (Substantia nigra, compact part) MBA:374 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in SNc (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146553971, an anterograde tracer injected into ENTl of a wild-type mouse (61% of the injection in ENTl) labelled axons in AAA (projection density 0.075).

Allen Mouse Brain Connectivity Atlas, experiment 146553971

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 313324664, an anterograde tracer injected into PVT of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (52% of the injection in PVT) labelled axons in AAA (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 313324664

Made by an adapter reading a database (allen-connectivity@1.3.0).

PT (Parataenial nucleus) MBA:15 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 123662982, an anterograde tracer injected into PT of a wild-type mouse (28% of the injection in PT) labelled axons in MEA (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 123662982

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PA (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PVH (Paraventricular hypothalamic nucleus) MBA:38 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in PVH (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127397469, an anterograde tracer injected into ENTl of a wild-type mouse (71% of the injection in ENTl) labelled axons in BMA (projection density 0.081).

Allen Mouse Brain Connectivity Atlas, experiment 127397469

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to NDB (Diagonal band nucleus) MBA:596 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in NDB (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158258062, an anterograde tracer injected into VMH of a wild-type mouse (20% of the injection in VMH) labelled axons in PA (projection density 0.101).

Allen Mouse Brain Connectivity Atlas, experiment 158258062

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VTA (Ventral tegmental area) MBA:749 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in VTA (projection density 0.085).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to DP (Dorsal peduncular area) MBA:814 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in DP (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to TU (Tuberal nucleus) MBA:614 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in TU (projection density 0.116).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AHN (Anterior hypothalamic nucleus) MBA:88 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in AHN (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PERI (Perirhinal area) MBA:922 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267150949, an anterograde tracer injected into COAp of a Slc17a7-IRES2-Cre mouse, the tracer Cre-dependent (53% of the injection in COAp) labelled axons in PERI (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 267150949

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to MA (Magnocellular nucleus) MBA:298 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 508775240, an anterograde tracer injected into BMA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (61% of the injection in BMA) labelled axons in MA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 508775240

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to B (Barrington's nucleus) MBA:280 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in B (projection density 0.068).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ProS (Prosubiculum) MBA:484682470 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in ProS (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

Made by an adapter reading a database (allen-connectivity@1.3.0).

SI (Substantia innominata) MBA:342 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 147632458, an anterograde tracer injected into SI of a wild-type mouse (45% of the injection in SI) labelled axons in BMA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 147632458

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127255962, an anterograde tracer injected into PVT of a wild-type mouse (31% of the injection in PVT) labelled axons in BMA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 127255962

Made by an adapter reading a database (allen-connectivity@1.3.0).

EPd (Endopiriform nucleus, dorsal part) MBA:952 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 308549214, an anterograde tracer injected into EPd of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (54% of the injection in EPd) labelled axons in IA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 308549214

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 640081415, an anterograde tracer injected into ENTl of a wild-type mouse (84% of the injection in ENTl) labelled axons in CEA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 640081415

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to VMH (Ventromedial hypothalamic nucleus) MBA:693 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in VMH (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

CP (Caudoputamen) MBA:672 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120762196, an anterograde tracer injected into CP of a wild-type mouse (54% of the injection in CP) labelled axons in IA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 120762196

Made by an adapter reading a database (allen-connectivity@1.3.0).

CP (Caudoputamen) MBA:672 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120762196, an anterograde tracer injected into CP of a wild-type mouse (54% of the injection in CP) labelled axons in TR (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 120762196

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272874417, an anterograde tracer injected into PVT of a wild-type mouse (38% of the injection in PVT) labelled axons in PA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 272874417

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 142656218, an anterograde tracer injected into ENTl of a wild-type mouse (50% of the injection in ENTl) labelled axons in BLA (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 142656218

Made by an adapter reading a database (allen-connectivity@1.3.0).

CP (Caudoputamen) MBA:672 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272824561, an anterograde tracer injected into CP of a wild-type mouse (52% of the injection in CP) labelled axons in BLA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 272824561

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to LC (Locus ceruleus) MBA:147 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in LC (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VISl (Lateral visual area) MBA:409 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in VISl (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

LA (Lateral amygdalar nucleus) MBA:131 projects to PERI (Perirhinal area) MBA:922 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 287027773, an anterograde tracer injected into LA of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (89% of the injection in LA) labelled axons in PERI (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 287027773

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 287225747, an anterograde tracer injected into PIR of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (89% of the injection in PIR) labelled axons in TR (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 287225747

Made by an adapter reading a database (allen-connectivity@1.3.0).

PB (Parabrachial nucleus) MBA:867 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 552284594, an anterograde tracer injected into PB of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (67% of the injection in PB) labelled axons in BLA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 552284594

Made by an adapter reading a database (allen-connectivity@1.3.0).

LM (Lateral mammillary nucleus) MBA:210 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 520619072, an anterograde tracer injected into LM of a Hdc-Cre_IM1 mouse, the tracer Cre-dependent (19% of the injection in LM) labelled axons in CEA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 520619072

Made by an adapter reading a database (allen-connectivity@1.3.0).

SI (Substantia innominata) MBA:342 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 147632458, an anterograde tracer injected into SI of a wild-type mouse (45% of the injection in SI) labelled axons in IA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 147632458

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to CUN (Cuneiform nucleus) MBA:616 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in CUN (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PeF (Perifornical nucleus) MBA:576073704 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in PeF (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

Made by an adapter reading a database (allen-connectivity@1.3.0).

AAA (Anterior amygdalar area) MBA:23 projects to ILA (Infralimbic area) MBA:44 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in ILA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 485875903, an anterograde tracer injected into PIR of a Gnb4-IRES2-Cre mouse, the tracer Cre-dependent (55% of the injection in PIR) labelled axons in BMA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 485875903

Made by an adapter reading a database (allen-connectivity@1.3.0).

AHN (Anterior hypothalamic nucleus) MBA:88 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126116142, an anterograde tracer injected into AHN of a wild-type mouse (32% of the injection in AHN) labelled axons in CEA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 126116142

Made by an adapter reading a database (allen-connectivity@1.3.0).