A mesoscale connectome of the mouse brain

CEA (Central amygdalar nucleus) MBA:536 projects to B (Barrington's nucleus) MBA:280 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in B (projection density 0.068).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to LM (Lateral mammillary nucleus) MBA:210 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in LM (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to AIp (Agranular insular area, posterior part) MBA:111 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267150949, an anterograde tracer injected into COAp of a Slc17a7-IRES2-Cre mouse, the tracer Cre-dependent (53% of the injection in COAp) labelled axons in AIp (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 267150949

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to LPO (Lateral preoptic area) MBA:226 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in LPO (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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MEA (Medial amygdalar nucleus) MBA:403 projects to TU (Tuberal nucleus) MBA:614 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in TU (projection density 0.080).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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MEA (Medial amygdalar nucleus) MBA:403 projects to BAC (Bed nucleus of the anterior commissure) MBA:287 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in BAC (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to AId (Agranular insular area, dorsal part) MBA:104 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in AId (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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AAA (Anterior amygdalar area) MBA:23 projects to PAG (Periaqueductal gray) MBA:795 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in PAG (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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PB (Parabrachial nucleus) MBA:867 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 552284594, an anterograde tracer injected into PB of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (67% of the injection in PB) labelled axons in MEA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 552284594

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MEA (Medial amygdalar nucleus) MBA:403 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in BLA (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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CEA (Central amygdalar nucleus) MBA:536 projects to RT (Reticular nucleus of the thalamus) MBA:262 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in RT (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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PA (Posterior amygdalar nucleus) MBA:780 projects to SI (Substantia innominata) MBA:342 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304721447, an anterograde tracer injected into PA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (69% of the injection in PA) labelled axons in SI (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 304721447

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MEA (Medial amygdalar nucleus) MBA:403 projects to BST (Bed nuclei of the stria terminalis) MBA:351 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 549361039, an anterograde tracer injected into MEA of a Oxtr-T2A-Cre mouse, the tracer Cre-dependent (61% of the injection in MEA) labelled axons in BST (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 549361039

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CLI (Central linear nucleus raphe) MBA:591 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 164985329, an anterograde tracer injected into CLI of a Gad2-IRES-Cre mouse, the tracer Cre-dependent (31% of the injection in CLI) labelled axons in CEA (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 164985329

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LA (Lateral amygdalar nucleus) MBA:131 projects to EPv (Endopiriform nucleus, ventral part) MBA:966 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126863090, an anterograde tracer injected into LA of a Kcnc2-Cre mouse, the tracer Cre-dependent (39% of the injection in LA) labelled axons in EPv (projection density 0.091).

Allen Mouse Brain Connectivity Atlas, experiment 126863090

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ECT (Ectorhinal area) MBA:895 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180435652, an anterograde tracer injected into ECT of a wild-type mouse (38% of the injection in ECT) labelled axons in TR (projection density 0.090).

Allen Mouse Brain Connectivity Atlas, experiment 180435652

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to ECT (Ectorhinal area) MBA:895 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in ECT (projection density 0.060).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

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CEA (Central amygdalar nucleus) MBA:536 projects to SSp-un (Primary somatosensory area, unassigned) MBA:182305689 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in SSp-un (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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MEA (Medial amygdalar nucleus) MBA:403 projects to PMd (Dorsal premammillary nucleus) MBA:980 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in PMd (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

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CEA (Central amygdalar nucleus) MBA:536 projects to PGRNl (Paragigantocellular reticular nucleus, lateral part) MBA:978 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in PGRNl (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

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MEA (Medial amygdalar nucleus) MBA:403 projects to LSv (Lateral septal nucleus, ventral part) MBA:266 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in LSv (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ILA (Infralimbic area) MBA:44 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in ILA (projection density 0.077).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to BAC (Bed nucleus of the anterior commissure) MBA:287 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in BAC (projection density 0.316).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

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MM (Medial mammillary nucleus) MBA:491 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126710740, an anterograde tracer injected into MM of a wild-type mouse (17% of the injection in MM) labelled axons in CEA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 126710740

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MEA (Medial amygdalar nucleus) MBA:403 projects to ASO (Accessory supraoptic group) MBA:332 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in ASO (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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MEA (Medial amygdalar nucleus) MBA:403 projects to AHN (Anterior hypothalamic nucleus) MBA:88 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in AHN (projection density 0.096).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to ORBm (Orbital area, medial part) MBA:731 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in ORBm (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

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MEA (Medial amygdalar nucleus) MBA:403 projects to VMPO (Ventromedial preoptic nucleus) MBA:576073699 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in VMPO (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

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VISC (Visceral area) MBA:677 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180436360, an anterograde tracer injected into VISC of a wild-type mouse (30% of the injection in VISC) labelled axons in MEA (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 180436360

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PB (Parabrachial nucleus) MBA:867 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 292790567, an anterograde tracer injected into PB of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (58% of the injection in PB) labelled axons in BMA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 292790567

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MEA (Medial amygdalar nucleus) MBA:403 projects to SBPV (Subparaventricular zone) MBA:347 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in SBPV (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to TMv (Tuberomammillary nucleus, ventral part) MBA:1 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in TMv (projection density 0.230).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

Made by an adapter reading a database (allen-connectivity@1.3.0).

TU (Tuberal nucleus) MBA:614 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264248605, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (36% of the injection in TU) labelled axons in CEA (projection density 0.106).

Allen Mouse Brain Connectivity Atlas, experiment 264248605

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IPN (Interpeduncular nucleus) MBA:100 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267538735, an anterograde tracer injected into IPN of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (20% of the injection in IPN) labelled axons in PA (projection density 0.084).

Allen Mouse Brain Connectivity Atlas, experiment 267538735

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to EPv (Endopiriform nucleus, ventral part) MBA:966 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267813932, an anterograde tracer injected into BMA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (38% of the injection in BMA) labelled axons in EPv (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 267813932

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to MRN (Midbrain reticular nucleus) MBA:128 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in MRN (projection density 0.060).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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ENTl (Entorhinal area, lateral part) MBA:918 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182794184, an anterograde tracer injected into ENTl of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (93% of the injection in ENTl) labelled axons in IA (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 182794184

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LHA (Lateral hypothalamic area) MBA:194 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286882342, an anterograde tracer injected into LHA of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (41% of the injection in LHA) labelled axons in IA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 286882342

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in TR (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

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ORBl (Orbital area, lateral part) MBA:723 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180709230, an anterograde tracer injected into ORBl of a wild-type mouse (34% of the injection in ORBl) labelled axons in COAa (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 180709230

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 204908781, an anterograde tracer injected into PVT of a Gal-Cre_KI87 mouse, the tracer Cre-dependent (52% of the injection in PVT) labelled axons in BMA (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 204908781

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MOs (Secondary motor area) MBA:993 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120814821, an anterograde tracer injected into MOs of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (84% of the injection in MOs) labelled axons in CEA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 120814821

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to LHA (Lateral hypothalamic area) MBA:194 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in LHA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to PP (Peripeduncular nucleus) MBA:1044 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in PP (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 508775240, an anterograde tracer injected into BMA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (61% of the injection in BMA) labelled axons in BA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 508775240

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to SBPV (Subparaventricular zone) MBA:347 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in SBPV (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

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MEA (Medial amygdalar nucleus) MBA:403 projects to PR (Perireunensis nucleus) MBA:1077 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in PR (projection density 0.048).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176886958, an anterograde tracer injected into VMH of a Esr1-2A-Cre mouse, the tracer Cre-dependent (33% of the injection in VMH) labelled axons in AAA (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 176886958

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183225830, an anterograde tracer injected into PVT of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (54% of the injection in PVT) labelled axons in BMA (projection density 0.121).

Allen Mouse Brain Connectivity Atlas, experiment 183225830

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CEA (Central amygdalar nucleus) MBA:536 projects to PSTN (Parasubthalamic nucleus) MBA:364 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in PSTN (projection density 0.215).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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