A mesoscale connectome of the mouse brain

PT (Parataenial nucleus) MBA:15 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167373923, an anterograde tracer injected into PT of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (75% of the injection in PT) labelled axons in BMA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 167373923

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DR (Dorsal nucleus raphe) MBA:872 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 128055110, an anterograde tracer injected into DR of a Slc6a4-Cre_ET33 mouse, the tracer Cre-dependent (65% of the injection in DR) labelled axons in TR (projection density 0.066).

Allen Mouse Brain Connectivity Atlas, experiment 128055110

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SUM (Supramammillary nucleus) MBA:525 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 581350498, an anterograde tracer injected into SUM of a Nos1-CreERT2 mouse, the tracer Cre-dependent (26% of the injection in SUM) labelled axons in IA (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 581350498

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MEA (Medial amygdalar nucleus) MBA:403 projects to EPd (Endopiriform nucleus, dorsal part) MBA:952 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in EPd (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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VTA (Ventral tegmental area) MBA:749 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127867804, an anterograde tracer injected into VTA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (22% of the injection in VTA) labelled axons in IA (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 127867804

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PA (Posterior amygdalar nucleus) MBA:780 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304721447, an anterograde tracer injected into PA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (69% of the injection in PA) labelled axons in COAa (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 304721447

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BST (Bed nuclei of the stria terminalis) MBA:351 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176886238, an anterograde tracer injected into BST of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in BST) labelled axons in BA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 176886238

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114249084, an anterograde tracer injected into COAp of a wild-type mouse (100% of the injection in COAp) labelled axons in CEA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 114249084

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CEA (Central amygdalar nucleus) MBA:536 projects to Xi (Xiphoid thalamic nucleus) MBA:560581559 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in Xi (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 308641549, an anterograde tracer injected into VMH of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (38% of the injection in VMH) labelled axons in COAp (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 308641549

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PAA (Piriform-amygdalar area) MBA:788 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114249084, an anterograde tracer injected into COAp of a wild-type mouse (100% of the injection in COAp) labelled axons in PAA (projection density 0.085).

Allen Mouse Brain Connectivity Atlas, experiment 114249084

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to SNc (Substantia nigra, compact part) MBA:374 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305321177, an anterograde tracer injected into BLA of a Slc32a1-IRES-Cre mouse, the tracer Cre-dependent (37% of the injection in BLA) labelled axons in SNc (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 305321177

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CEA (Central amygdalar nucleus) MBA:536 projects to MPN (Medial preoptic nucleus) MBA:515 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in MPN (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

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VISC (Visceral area) MBA:677 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180917660, an anterograde tracer injected into VISC of a wild-type mouse (60% of the injection in VISC) labelled axons in IA (projection density 0.088).

Allen Mouse Brain Connectivity Atlas, experiment 180917660

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MEA (Medial amygdalar nucleus) MBA:403 projects to DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in DMH (projection density 0.052).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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CEA (Central amygdalar nucleus) MBA:536 projects to BAC (Bed nucleus of the anterior commissure) MBA:287 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in BAC (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

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NLOT (Nucleus of the lateral olfactory tract) MBA:619 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 294174996, an anterograde tracer injected into NLOT of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (97% of the injection in NLOT) labelled axons in LA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 294174996

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MS (Medial septal nucleus) MBA:564 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 156819600, an anterograde tracer injected into MS of a Chat-IRES-Cre-neo mouse, the tracer Cre-dependent (89% of the injection in MS) labelled axons in PA (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 156819600

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 303708513, an anterograde tracer injected into VMH of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (29% of the injection in VMH) labelled axons in PA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 303708513

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277854208, an anterograde tracer injected into VMH of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (39% of the injection in VMH) labelled axons in MEA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 277854208

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MM (Medial mammillary nucleus) MBA:491 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158314987, an anterograde tracer injected into MM of a wild-type mouse (26% of the injection in MM) labelled axons in CEA (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 158314987

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to AHN (Anterior hypothalamic nucleus) MBA:88 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in AHN (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to FS (Fundus of striatum) MBA:998 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in FS (projection density 0.054).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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MEA (Medial amygdalar nucleus) MBA:403 projects to MDRN (Medullary reticular nucleus) MBA:395 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in MDRN (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PAA (Piriform-amygdalar area) MBA:788 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in PAA (projection density 0.060).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

VTA (Ventral tegmental area) MBA:749 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 156314762, an anterograde tracer injected into VTA of a Th-IRES-CreER mouse, the tracer Cre-dependent (38% of the injection in VTA) labelled axons in BMA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 156314762

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VTA (Ventral tegmental area) MBA:749 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 156314762, an anterograde tracer injected into VTA of a Th-IRES-CreER mouse, the tracer Cre-dependent (38% of the injection in VTA) labelled axons in BLA (projection density 0.048).

Allen Mouse Brain Connectivity Atlas, experiment 156314762

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 586054741, an anterograde tracer injected into PIL of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (49% of the injection in PIL) labelled axons in BA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 586054741

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AAA (Anterior amygdalar area) MBA:23 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in TR (projection density 0.057).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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CEA (Central amygdalar nucleus) MBA:536 projects to RR (Midbrain reticular nucleus, retrorubral area) MBA:246 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in RR (projection density 0.080).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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MEA (Medial amygdalar nucleus) MBA:403 projects to AVP (Anteroventral preoptic nucleus) MBA:263 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in AVP (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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VTA (Ventral tegmental area) MBA:749 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165975096, an anterograde tracer injected into VTA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (17% of the injection in VTA) labelled axons in MEA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 165975096

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MEA (Medial amygdalar nucleus) MBA:403 projects to AUDv (Ventral auditory area) MBA:1018 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in AUDv (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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ENTl (Entorhinal area, lateral part) MBA:918 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126116848, an anterograde tracer injected into ENTl of a wild-type mouse (100% of the injection in ENTl) labelled axons in BA (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 126116848

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to FS (Fundus of striatum) MBA:998 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305321177, an anterograde tracer injected into BLA of a Slc32a1-IRES-Cre mouse, the tracer Cre-dependent (37% of the injection in BLA) labelled axons in FS (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 305321177

Made by an adapter reading a database (allen-connectivity@1.3.0).

DR (Dorsal nucleus raphe) MBA:872 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 582609848, an anterograde tracer injected into DR of a Esr2-IRES2-Cre mouse, the tracer Cre-dependent (91% of the injection in DR) labelled axons in IA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 582609848

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PIR (Piriform area) MBA:961 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 171485060, an anterograde tracer injected into PIR of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (100% of the injection in PIR) labelled axons in IA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 171485060

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NDB (Diagonal band nucleus) MBA:596 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286319739, an anterograde tracer injected into NDB of a Ntrk1-IRES-Cre mouse, the tracer Cre-dependent (72% of the injection in NDB) labelled axons in AAA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 286319739

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CEA (Central amygdalar nucleus) MBA:536 projects to ENTl (Entorhinal area, lateral part) MBA:918 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in ENTl (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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VTA (Ventral tegmental area) MBA:749 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 171021829, an anterograde tracer injected into VTA of a Cck-IRES-Cre mouse, the tracer Cre-dependent (34% of the injection in VTA) labelled axons in CEA (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 171021829

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MEA (Medial amygdalar nucleus) MBA:403 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286303000, an anterograde tracer injected into MEA of a Slc6a3-Cre mouse, the tracer Cre-dependent (97% of the injection in MEA) labelled axons in AAA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 286303000

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MEA (Medial amygdalar nucleus) MBA:403 projects to AOB (Accessory olfactory bulb) MBA:151 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in AOB (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to PERI (Perirhinal area) MBA:922 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in PERI (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to SI (Substantia innominata) MBA:342 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in SI (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PS (Parastrial nucleus) MBA:1109 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in PS (projection density 0.124).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

Made by an adapter reading a database (allen-connectivity@1.3.0).

LHA (Lateral hypothalamic area) MBA:194 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165035106, an anterograde tracer injected into LHA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (43% of the injection in LHA) labelled axons in BMA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 165035106

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to DR (Dorsal nucleus raphe) MBA:872 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in DR (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

RE (Nucleus of reuniens) MBA:181 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 310976160, an anterograde tracer injected into RE of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (35% of the injection in RE) labelled axons in TR (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 310976160

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PSTN (Parasubthalamic nucleus) MBA:364 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in PSTN (projection density 0.163).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

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CEA (Central amygdalar nucleus) MBA:536 projects to SUT (Supratrigeminal nucleus) MBA:534 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in SUT (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

Made by an adapter reading a database (allen-connectivity@1.3.0).