A mesoscale connectome of the mouse brain

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 478095541, an anterograde tracer injected into VMH of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (28% of the injection in VMH) labelled axons in COAp (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 478095541

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to IV (Trochlear nucleus) MBA:115 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in IV (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

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PIR (Piriform area) MBA:961 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 287225747, an anterograde tracer injected into PIR of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (89% of the injection in PIR) labelled axons in COAp (projection density 0.048).

Allen Mouse Brain Connectivity Atlas, experiment 287225747

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ENTl (Entorhinal area, lateral part) MBA:918 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263974698, an anterograde tracer injected into ENTl of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (96% of the injection in ENTl) labelled axons in BA (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 263974698

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PT (Parataenial nucleus) MBA:15 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159432479, an anterograde tracer injected into PT of a Cck-IRES-Cre mouse, the tracer Cre-dependent (30% of the injection in PT) labelled axons in BLA (projection density 0.097).

Allen Mouse Brain Connectivity Atlas, experiment 159432479

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ZI (Zona incerta) MBA:797 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175018829, an anterograde tracer injected into ZI of a wild-type mouse (29% of the injection in ZI) labelled axons in AAA (projection density 0.059).

Allen Mouse Brain Connectivity Atlas, experiment 175018829

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DR (Dorsal nucleus raphe) MBA:872 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 128055110, an anterograde tracer injected into DR of a Slc6a4-Cre_ET33 mouse, the tracer Cre-dependent (65% of the injection in DR) labelled axons in COAp (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 128055110

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to BAC (Bed nucleus of the anterior commissure) MBA:287 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in BAC (projection density 0.365).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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MEA (Medial amygdalar nucleus) MBA:403 projects to MA (Magnocellular nucleus) MBA:298 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305645132, an anterograde tracer injected into MEA of a Htr3a-Cre_NO152 mouse, the tracer Cre-dependent (40% of the injection in MEA) labelled axons in MA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 305645132

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MOs (Secondary motor area) MBA:993 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180719293, an anterograde tracer injected into MOs of a wild-type mouse (81% of the injection in MOs) labelled axons in CEA (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 180719293

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CEA (Central amygdalar nucleus) MBA:536 projects to AHN (Anterior hypothalamic nucleus) MBA:88 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in AHN (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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MEA (Medial amygdalar nucleus) MBA:403 projects to ARH (Arcuate hypothalamic nucleus) MBA:223 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in ARH (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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PB (Parabrachial nucleus) MBA:867 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 552284594, an anterograde tracer injected into PB of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (67% of the injection in PB) labelled axons in COAa (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 552284594

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TR (Postpiriform transition area) MBA:566 projects to BST (Bed nuclei of the stria terminalis) MBA:351 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126653015, an anterograde tracer injected into TR of a wild-type mouse (99% of the injection in TR) labelled axons in BST (projection density 0.078).

Allen Mouse Brain Connectivity Atlas, experiment 126653015

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TR (Postpiriform transition area) MBA:566 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126653015, an anterograde tracer injected into TR of a wild-type mouse (99% of the injection in TR) labelled axons in BMA (projection density 0.125).

Allen Mouse Brain Connectivity Atlas, experiment 126653015

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MEA (Medial amygdalar nucleus) MBA:403 projects to TRS (Triangular nucleus of septum) MBA:581 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 549361039, an anterograde tracer injected into MEA of a Oxtr-T2A-Cre mouse, the tracer Cre-dependent (61% of the injection in MEA) labelled axons in TRS (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 549361039

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AAA (Anterior amygdalar area) MBA:23 projects to SPFp (Subparafascicular nucleus, parvicellular part) MBA:422 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in SPFp (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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AAA (Anterior amygdalar area) MBA:23 projects to MT (Medial terminal nucleus of the accessory optic tract) MBA:58 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in MT (projection density 0.089).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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PT (Parataenial nucleus) MBA:15 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176897793, an anterograde tracer injected into PT of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (66% of the injection in PT) labelled axons in LA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 176897793

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MEA (Medial amygdalar nucleus) MBA:403 projects to PMd (Dorsal premammillary nucleus) MBA:980 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in PMd (projection density 0.048).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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BST (Bed nuclei of the stria terminalis) MBA:351 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 204832917, an anterograde tracer injected into BST of a Crh-IRES-Cre_ZJH mouse, the tracer Cre-dependent (45% of the injection in BST) labelled axons in COAa (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 204832917

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to BST (Bed nuclei of the stria terminalis) MBA:351 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in BST (projection density 0.142).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 561916513, an anterograde tracer injected into ENTl of a Htr1a-IRES2-Cre mouse, the tracer Cre-dependent (62% of the injection in ENTl) labelled axons in BLA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 561916513

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ProS (Prosubiculum) MBA:484682470 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in ProS (projection density 0.078).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 292211026, an anterograde tracer injected into VMH of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (47% of the injection in VMH) labelled axons in COAp (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 292211026

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ENTl (Entorhinal area, lateral part) MBA:918 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183225124, an anterograde tracer injected into ENTl of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (80% of the injection in ENTl) labelled axons in BMA (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 183225124

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MEA (Medial amygdalar nucleus) MBA:403 projects to PD (Posterodorsal preoptic nucleus) MBA:914 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in PD (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

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ACB (Nucleus accumbens) MBA:56 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168615344, an anterograde tracer injected into ACB of a Drd1a-Cre_EY262 mouse, the tracer Cre-dependent (54% of the injection in ACB) labelled axons in AAA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 168615344

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CA1 (Field CA1) MBA:382 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 549203025, an anterograde tracer injected into CA1 of a Oxtr-T2A-Cre mouse, the tracer Cre-dependent (47% of the injection in CA1) labelled axons in IA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 549203025

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MEA (Medial amygdalar nucleus) MBA:403 projects to ADP (Anterodorsal preoptic nucleus) MBA:72 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in ADP (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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SGN (Suprageniculate nucleus) MBA:325 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113165340, an anterograde tracer injected into SGN of a Etv1-CreERT2 mouse, the tracer Cre-dependent (16% of the injection in SGN) labelled axons in BMA (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 113165340

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PIR (Piriform area) MBA:961 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in PIR (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SBPV (Subparaventricular zone) MBA:347 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in SBPV (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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CEA (Central amygdalar nucleus) MBA:536 projects to I5 (Intertrigeminal nucleus) MBA:549009227 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in I5 (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

VTA (Ventral tegmental area) MBA:749 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127798146, an anterograde tracer injected into VTA of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (45% of the injection in VTA) labelled axons in BMA (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 127798146

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ACB (Nucleus accumbens) MBA:56 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167904966, an anterograde tracer injected into ACB of a Drd2-Cre_ER44 mouse, the tracer Cre-dependent (57% of the injection in ACB) labelled axons in IA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 167904966

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CEA (Central amygdalar nucleus) MBA:536 projects to PF (Parafascicular nucleus) MBA:930 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in PF (projection density 0.117).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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ENTl (Entorhinal area, lateral part) MBA:918 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114472145, an anterograde tracer injected into ENTl of a wild-type mouse (94% of the injection in ENTl) labelled axons in BLA (projection density 0.391).

Allen Mouse Brain Connectivity Atlas, experiment 114472145

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TU (Tuberal nucleus) MBA:614 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264248605, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (36% of the injection in TU) labelled axons in AAA (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 264248605

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to AId (Agranular insular area, dorsal part) MBA:104 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in AId (projection density 0.110).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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CEA (Central amygdalar nucleus) MBA:536 projects to IAM (Interanteromedial nucleus of the thalamus) MBA:1120 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in IAM (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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PIR (Piriform area) MBA:961 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127907465, an anterograde tracer injected into PIR of a wild-type mouse (89% of the injection in PIR) labelled axons in BMA (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 127907465

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MEA (Medial amygdalar nucleus) MBA:403 projects to PF (Parafascicular nucleus) MBA:930 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in PF (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PIR (Piriform area) MBA:961 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in PIR (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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MEA (Medial amygdalar nucleus) MBA:403 projects to LHA (Lateral hypothalamic area) MBA:194 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 564357489, an anterograde tracer injected into MEA of a Esr2-IRES2-Cre mouse, the tracer Cre-dependent (54% of the injection in MEA) labelled axons in LHA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 564357489

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PD (Posterodorsal preoptic nucleus) MBA:914 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in PD (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

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MEA (Medial amygdalar nucleus) MBA:403 projects to Pa4 (Paratrochlear nucleus) MBA:606826663 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in Pa4 (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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CEA (Central amygdalar nucleus) MBA:536 projects to B (Barrington's nucleus) MBA:280 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in B (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

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MEA (Medial amygdalar nucleus) MBA:403 projects to PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in PIL (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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ZI (Zona incerta) MBA:797 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168663472, an anterograde tracer injected into ZI of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (34% of the injection in ZI) labelled axons in CEA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 168663472

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