A mesoscale connectome of the mouse brain

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ECT (Ectorhinal area) MBA:895 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in ECT (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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MEA (Medial amygdalar nucleus) MBA:403 projects to SNc (Substantia nigra, compact part) MBA:374 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in SNc (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

PAG (Periaqueductal gray) MBA:795 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 147635309, an anterograde tracer injected into PAG of a wild-type mouse (27% of the injection in PAG) labelled axons in CEA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 147635309

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DR (Dorsal nucleus raphe) MBA:872 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 547510030, an anterograde tracer injected into DR of a Slc17a8-IRES2-Cre mouse, the tracer Cre-dependent (75% of the injection in DR) labelled axons in COAa (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 547510030

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MEA (Medial amygdalar nucleus) MBA:403 projects to SPFm (Subparafascicular nucleus, magnocellular part) MBA:414 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in SPFm (projection density 0.054).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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VTA (Ventral tegmental area) MBA:749 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127798146, an anterograde tracer injected into VTA of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (45% of the injection in VTA) labelled axons in LA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 127798146

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to AON (Anterior olfactory nucleus) MBA:159 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in AON (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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ZI (Zona incerta) MBA:797 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175018829, an anterograde tracer injected into ZI of a wild-type mouse (29% of the injection in ZI) labelled axons in CEA (projection density 0.182).

Allen Mouse Brain Connectivity Atlas, experiment 175018829

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MM (Medial mammillary nucleus) MBA:491 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158314987, an anterograde tracer injected into MM of a wild-type mouse (26% of the injection in MM) labelled axons in MEA (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 158314987

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to PAA (Piriform-amygdalar area) MBA:788 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in PAA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in MEA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in DMH (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

LHA (Lateral hypothalamic area) MBA:194 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304674547, an anterograde tracer injected into LHA of a Slc32a1-IRES-Cre mouse, the tracer Cre-dependent (51% of the injection in LHA) labelled axons in CEA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 304674547

Made by an adapter reading a database (allen-connectivity@1.3.0).

MRN (Midbrain reticular nucleus) MBA:128 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304761539, an anterograde tracer injected into MRN of a Th-Cre_FI172 mouse, the tracer Cre-dependent (31% of the injection in MRN) labelled axons in CEA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 304761539

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182794184, an anterograde tracer injected into ENTl of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (93% of the injection in ENTl) labelled axons in BMA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 182794184

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 171485060, an anterograde tracer injected into PIR of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (100% of the injection in PIR) labelled axons in BMA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 171485060

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to NDB (Diagonal band nucleus) MBA:596 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in NDB (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 142654100, an anterograde tracer injected into ENTl of a wild-type mouse (91% of the injection in ENTl) labelled axons in LA (projection density 0.101).

Allen Mouse Brain Connectivity Atlas, experiment 142654100

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to ECT (Ectorhinal area) MBA:895 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in ECT (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to MOs (Secondary motor area) MBA:993 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in MOs (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

NDB (Diagonal band nucleus) MBA:596 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 177605425, an anterograde tracer injected into NDB of a Chat-IRES-Cre-neo mouse, the tracer Cre-dependent (62% of the injection in NDB) labelled axons in TR (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 177605425

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272414403, an anterograde tracer injected into ENTl of a wild-type mouse (71% of the injection in ENTl) labelled axons in BLA (projection density 0.071).

Allen Mouse Brain Connectivity Atlas, experiment 272414403

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to ARH (Arcuate hypothalamic nucleus) MBA:223 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in ARH (projection density 0.064).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to CA3 (Field CA3) MBA:463 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in CA3 (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

Made by an adapter reading a database (allen-connectivity@1.3.0).

PA (Posterior amygdalar nucleus) MBA:780 projects to BAC (Bed nucleus of the anterior commissure) MBA:287 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304721447, an anterograde tracer injected into PA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (69% of the injection in PA) labelled axons in BAC (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 304721447

Made by an adapter reading a database (allen-connectivity@1.3.0).

AHN (Anterior hypothalamic nucleus) MBA:88 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180674463, an anterograde tracer injected into AHN of a wild-type mouse (24% of the injection in AHN) labelled axons in BMA (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 180674463

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SUM (Supramammillary nucleus) MBA:525 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in SUM (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

Made by an adapter reading a database (allen-connectivity@1.3.0).

VISp (Primary visual area) MBA:385 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180296424, an anterograde tracer injected into VISp of a wild-type mouse (48% of the injection in VISp) labelled axons in LA (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 180296424

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to GPi (Globus pallidus, internal segment) MBA:1031 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in GPi (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in DMH (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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TR (Postpiriform transition area) MBA:566 projects to TU (Tuberal nucleus) MBA:614 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126653015, an anterograde tracer injected into TR of a wild-type mouse (99% of the injection in TR) labelled axons in TU (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 126653015

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184158996, an anterograde tracer injected into PVT of a Calb2-IRES-Cre mouse, the tracer Cre-dependent (42% of the injection in PVT) labelled axons in BMA (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 184158996

Made by an adapter reading a database (allen-connectivity@1.3.0).

TU (Tuberal nucleus) MBA:614 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 177890956, an anterograde tracer injected into TU of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (18% of the injection in TU) labelled axons in AAA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 177890956

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in MPO (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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PH (Posterior hypothalamic nucleus) MBA:946 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 551738231, an anterograde tracer injected into PH of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (58% of the injection in PH) labelled axons in AAA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 551738231

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PA (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

PH (Posterior hypothalamic nucleus) MBA:946 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 268208632, an anterograde tracer injected into PH of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (21% of the injection in PH) labelled axons in AAA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 268208632

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MEA (Medial amygdalar nucleus) MBA:403 projects to NTS (Nucleus of the solitary tract) MBA:651 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in NTS (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 298050269, an anterograde tracer injected into PVT of a Lypd6-Cre_KL156 mouse, the tracer Cre-dependent (45% of the injection in PVT) labelled axons in LA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 298050269

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to EPd (Endopiriform nucleus, dorsal part) MBA:952 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305645132, an anterograde tracer injected into MEA of a Htr3a-Cre_NO152 mouse, the tracer Cre-dependent (40% of the injection in MEA) labelled axons in EPd (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 305645132

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to EPd (Endopiriform nucleus, dorsal part) MBA:952 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114249084, an anterograde tracer injected into COAp of a wild-type mouse (100% of the injection in COAp) labelled axons in EPd (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 114249084

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NDB (Diagonal band nucleus) MBA:596 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 515191874, an anterograde tracer injected into NDB of a Ntrk1-IRES-Cre mouse, the tracer Cre-dependent (45% of the injection in NDB) labelled axons in PA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 515191874

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PMv (Ventral premammillary nucleus) MBA:1004 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293469501, an anterograde tracer injected into MEA of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (77% of the injection in MEA) labelled axons in PMv (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 293469501

Made by an adapter reading a database (allen-connectivity@1.3.0).

PMv (Ventral premammillary nucleus) MBA:1004 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 294316542, an anterograde tracer injected into PMv of a Tac1-IRES2-Cre mouse, the tracer Cre-dependent (26% of the injection in PMv) labelled axons in AAA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 294316542

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SI (Substantia innominata) MBA:342 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159650350, an anterograde tracer injected into SI of a wild-type mouse (38% of the injection in SI) labelled axons in IA (projection density 0.075).

Allen Mouse Brain Connectivity Atlas, experiment 159650350

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 516278420, an anterograde tracer injected into ENTl of a Chrnb4-Cre_OL57 mouse, the tracer Cre-dependent (100% of the injection in ENTl) labelled axons in BMA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 516278420

Made by an adapter reading a database (allen-connectivity@1.3.0).

LA (Lateral amygdalar nucleus) MBA:131 projects to ECT (Ectorhinal area) MBA:895 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 287027773, an anterograde tracer injected into LA of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (89% of the injection in LA) labelled axons in ECT (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 287027773

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to VPMpc (Ventral posteromedial nucleus of the thalamus, parvicellular part) MBA:741 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in VPMpc (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

Made by an adapter reading a database (allen-connectivity@1.3.0).

CP (Caudoputamen) MBA:672 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113505468, an anterograde tracer injected into CP of a wild-type mouse (58% of the injection in CP) labelled axons in CEA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 113505468

Made by an adapter reading a database (allen-connectivity@1.3.0).

PB (Parabrachial nucleus) MBA:867 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301210208, an anterograde tracer injected into PB of a Gal-Cre_KI87 mouse, the tracer Cre-dependent (42% of the injection in PB) labelled axons in BA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 301210208

Made by an adapter reading a database (allen-connectivity@1.3.0).