A mesoscale connectome of the mouse brain

MEA (Medial amygdalar nucleus) MBA:403 projects to VPMpc (Ventral posteromedial nucleus of the thalamus, parvicellular part) MBA:741 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in VPMpc (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SSp-tr (Primary somatosensory area, trunk) MBA:361 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in SSp-tr (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

PMv (Ventral premammillary nucleus) MBA:1004 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263780018, an anterograde tracer injected into PMv of a Slc6a3-Cre mouse, the tracer Cre-dependent (74% of the injection in PMv) labelled axons in PA (projection density 0.119).

Allen Mouse Brain Connectivity Atlas, experiment 263780018

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MEA (Medial amygdalar nucleus) MBA:403 projects to LPO (Lateral preoptic area) MBA:226 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 564357489, an anterograde tracer injected into MEA of a Esr2-IRES2-Cre mouse, the tracer Cre-dependent (54% of the injection in MEA) labelled axons in LPO (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 564357489

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PB (Parabrachial nucleus) MBA:867 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 511971714, an anterograde tracer injected into PB of a Th-Cre_FI172 mouse, the tracer Cre-dependent (46% of the injection in PB) labelled axons in COAp (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 511971714

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SGN (Suprageniculate nucleus) MBA:325 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113165340, an anterograde tracer injected into SGN of a Etv1-CreERT2 mouse, the tracer Cre-dependent (16% of the injection in SGN) labelled axons in IA (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 113165340

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DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 266174751, an anterograde tracer injected into DMH of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (11% of the injection in DMH) labelled axons in MEA (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 266174751

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to LM (Lateral mammillary nucleus) MBA:210 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in LM (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

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CA1 (Field CA1) MBA:382 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286610216, an anterograde tracer injected into CA1 of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (83% of the injection in CA1) labelled axons in PA (projection density 0.132).

Allen Mouse Brain Connectivity Atlas, experiment 286610216

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CP (Caudoputamen) MBA:672 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 485846989, an anterograde tracer injected into CP of a Ntng2-IRES2-Cre mouse, the tracer Cre-dependent (29% of the injection in CP) labelled axons in PA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 485846989

Made by an adapter reading a database (allen-connectivity@1.3.0).

ProS (Prosubiculum) MBA:484682470 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293701770, an anterograde tracer injected into ProS of a Drd3-Cre_KI196 mouse, the tracer Cre-dependent (53% of the injection in ProS) labelled axons in BLA (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 293701770

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PMv (Ventral premammillary nucleus) MBA:1004 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286728896, an anterograde tracer injected into PMv of a Th-Cre_FI172 mouse, the tracer Cre-dependent (26% of the injection in PMv) labelled axons in PA (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 286728896

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 292211026, an anterograde tracer injected into VMH of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (47% of the injection in VMH) labelled axons in IA (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 292211026

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RE (Nucleus of reuniens) MBA:181 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 538833505, an anterograde tracer injected into RE of a Calb1-T2A-dgCre mouse, the tracer Cre-dependent (64% of the injection in RE) labelled axons in BA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 538833505

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PMd (Dorsal premammillary nucleus) MBA:980 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in PMd (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

SI (Substantia innominata) MBA:342 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 161460864, an anterograde tracer injected into SI of a Chat-IRES-Cre-neo mouse, the tracer Cre-dependent (50% of the injection in SI) labelled axons in BMA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 161460864

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AAA (Anterior amygdalar area) MBA:23 projects to IMD (Intermediodorsal nucleus of the thalamus) MBA:59 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in IMD (projection density 0.104).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SSp-n (Primary somatosensory area, nose) MBA:353 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in SSp-n (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

AAA (Anterior amygdalar area) MBA:23 projects to AIp (Agranular insular area, posterior part) MBA:111 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in AIp (projection density 0.061).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 585026021, an anterograde tracer injected into ENTm of a wild-type mouse (87% of the injection in ENTm) labelled axons in LA (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 585026021

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MEA (Medial amygdalar nucleus) MBA:403 projects to AMB (Nucleus ambiguus) MBA:135 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in AMB (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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VISp (Primary visual area) MBA:385 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114008926, an anterograde tracer injected into VISp of a wild-type mouse (31% of the injection in VISp) labelled axons in BLA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 114008926

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PSTN (Parasubthalamic nucleus) MBA:364 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264696942, an anterograde tracer injected into PSTN of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (25% of the injection in PSTN) labelled axons in AAA (projection density 0.055).

Allen Mouse Brain Connectivity Atlas, experiment 264696942

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to LDT (Laterodorsal tegmental nucleus) MBA:162 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in LDT (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ASO (Accessory supraoptic group) MBA:332 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in ASO (projection density 0.070).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

Made by an adapter reading a database (allen-connectivity@1.3.0).

PH (Posterior hypothalamic nucleus) MBA:946 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159649643, an anterograde tracer injected into PH of a wild-type mouse (26% of the injection in PH) labelled axons in MEA (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 159649643

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MEA (Medial amygdalar nucleus) MBA:403 projects to TMv (Tuberomammillary nucleus, ventral part) MBA:1 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293469501, an anterograde tracer injected into MEA of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (77% of the injection in MEA) labelled axons in TMv (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 293469501

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to FS (Fundus of striatum) MBA:998 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in FS (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

Made by an adapter reading a database (allen-connectivity@1.3.0).

TU (Tuberal nucleus) MBA:614 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264320076, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (15% of the injection in TU) labelled axons in BLA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 264320076

Made by an adapter reading a database (allen-connectivity@1.3.0).

RE (Nucleus of reuniens) MBA:181 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 538833505, an anterograde tracer injected into RE of a Calb1-T2A-dgCre mouse, the tracer Cre-dependent (64% of the injection in RE) labelled axons in LA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 538833505

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in BA (projection density 0.134).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

Made by an adapter reading a database (allen-connectivity@1.3.0).

SI (Substantia innominata) MBA:342 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159650350, an anterograde tracer injected into SI of a wild-type mouse (38% of the injection in SI) labelled axons in TR (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 159650350

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to TMd (Tuberomammillary nucleus, dorsal part) MBA:1126 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in TMd (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 478095541, an anterograde tracer injected into VMH of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (28% of the injection in VMH) labelled axons in BMA (projection density 0.073).

Allen Mouse Brain Connectivity Atlas, experiment 478095541

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VPMpc (Ventral posteromedial nucleus of the thalamus, parvicellular part) MBA:741 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in VPMpc (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

Made by an adapter reading a database (allen-connectivity@1.3.0).

SI (Substantia innominata) MBA:342 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 147632458, an anterograde tracer injected into SI of a wild-type mouse (45% of the injection in SI) labelled axons in BLA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 147632458

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BST (Bed nuclei of the stria terminalis) MBA:351 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176886238, an anterograde tracer injected into BST of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in BST) labelled axons in CEA (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 176886238

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DR (Dorsal nucleus raphe) MBA:872 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183562831, an anterograde tracer injected into DR of a Cck-IRES-Cre mouse, the tracer Cre-dependent (33% of the injection in DR) labelled axons in CEA (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 183562831

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in COAp (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PPY (Parapyramidal nucleus) MBA:1069 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in PPY (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

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DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304617742, an anterograde tracer injected into DMH of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (12% of the injection in DMH) labelled axons in IA (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 304617742

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to AIp (Agranular insular area, posterior part) MBA:111 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in AIp (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

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CEA (Central amygdalar nucleus) MBA:536 projects to CLI (Central linear nucleus raphe) MBA:591 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in CLI (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PVp (Periventricular hypothalamic nucleus, posterior part) MBA:126 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in PVp (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

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PIR (Piriform area) MBA:961 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 518745077, an anterograde tracer injected into PIR of a Gpr26-Cre_KO250 mouse, the tracer Cre-dependent (93% of the injection in PIR) labelled axons in AAA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 518745077

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AAA (Anterior amygdalar area) MBA:23 projects to PB (Parabrachial nucleus) MBA:867 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in PB (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in TR (projection density 0.074).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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MOs (Secondary motor area) MBA:993 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301267162, an anterograde tracer injected into MOs of a Gpr26-Cre_KO250 mouse, the tracer Cre-dependent (100% of the injection in MOs) labelled axons in CEA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 301267162

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to NLOT (Nucleus of the lateral olfactory tract) MBA:619 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in NLOT (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264319363, an anterograde tracer injected into VMH of a Esr1-2A-Cre mouse, the tracer Cre-dependent (29% of the injection in VMH) labelled axons in AAA (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 264319363

Made by an adapter reading a database (allen-connectivity@1.3.0).