A mesoscale connectome of the mouse brain

AON (Anterior olfactory nucleus) MBA:159 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114755099, an anterograde tracer injected into AON of a wild-type mouse (30% of the injection in AON) labelled axons in COAa (projection density 0.057).

Allen Mouse Brain Connectivity Atlas, experiment 114755099

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MEA (Medial amygdalar nucleus) MBA:403 projects to SBPV (Subparaventricular zone) MBA:347 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in SBPV (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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PB (Parabrachial nucleus) MBA:867 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 511971714, an anterograde tracer injected into PB of a Th-Cre_FI172 mouse, the tracer Cre-dependent (46% of the injection in PB) labelled axons in IA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 511971714

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AIp (Agranular insular area, posterior part) MBA:111 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286775476, an anterograde tracer injected into AIp of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (43% of the injection in AIp) labelled axons in COAp (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 286775476

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MM (Medial mammillary nucleus) MBA:491 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304720034, an anterograde tracer injected into MM of a Nos1-CreERT2 mouse, the tracer Cre-dependent (24% of the injection in MM) labelled axons in AAA (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 304720034

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PIR (Piriform area) MBA:961 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 131068390, an anterograde tracer injected into PIR of a wild-type mouse (95% of the injection in PIR) labelled axons in BA (projection density 0.093).

Allen Mouse Brain Connectivity Atlas, experiment 131068390

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CEA (Central amygdalar nucleus) MBA:536 projects to ADP (Anterodorsal preoptic nucleus) MBA:72 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in ADP (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 478095541, an anterograde tracer injected into VMH of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (28% of the injection in VMH) labelled axons in MEA (projection density 0.087).

Allen Mouse Brain Connectivity Atlas, experiment 478095541

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CA1 (Field CA1) MBA:382 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175718634, an anterograde tracer injected into CA1 of a Etv1-CreERT2 mouse, the tracer Cre-dependent (76% of the injection in CA1) labelled axons in PA (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 175718634

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182337561, an anterograde tracer injected into VMH of a Nr5a1-Cre mouse, the tracer Cre-dependent (65% of the injection in VMH) labelled axons in MEA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 182337561

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AAA (Anterior amygdalar area) MBA:23 projects to AOB (Accessory olfactory bulb) MBA:151 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in AOB (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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NDB (Diagonal band nucleus) MBA:596 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286319739, an anterograde tracer injected into NDB of a Ntrk1-IRES-Cre mouse, the tracer Cre-dependent (72% of the injection in NDB) labelled axons in COAa (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 286319739

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RE (Nucleus of reuniens) MBA:181 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265286700, an anterograde tracer injected into RE of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (49% of the injection in RE) labelled axons in TR (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 265286700

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PIR (Piriform area) MBA:961 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127907465, an anterograde tracer injected into PIR of a wild-type mouse (89% of the injection in PIR) labelled axons in AAA (projection density 0.131).

Allen Mouse Brain Connectivity Atlas, experiment 127907465

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PB (Parabrachial nucleus) MBA:867 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 313141786, an anterograde tracer injected into PB of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (71% of the injection in PB) labelled axons in BLA (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 313141786

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PIR (Piriform area) MBA:961 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158374671, an anterograde tracer injected into PIR of a wild-type mouse (31% of the injection in PIR) labelled axons in CEA (projection density 0.242).

Allen Mouse Brain Connectivity Atlas, experiment 158374671

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ENTl (Entorhinal area, lateral part) MBA:918 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272414403, an anterograde tracer injected into ENTl of a wild-type mouse (71% of the injection in ENTl) labelled axons in AAA (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 272414403

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MEA (Medial amygdalar nucleus) MBA:403 projects to PR (Perireunensis nucleus) MBA:1077 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in PR (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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RE (Nucleus of reuniens) MBA:181 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175374982, an anterograde tracer injected into RE of a wild-type mouse (64% of the injection in RE) labelled axons in IA (projection density 0.073).

Allen Mouse Brain Connectivity Atlas, experiment 175374982

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ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 585051446, an anterograde tracer injected into ENTm of a wild-type mouse (92% of the injection in ENTm) labelled axons in PA (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 585051446

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PPN (Pedunculopontine nucleus) MBA:1052 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in PPN (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184158996, an anterograde tracer injected into PVT of a Calb2-IRES-Cre mouse, the tracer Cre-dependent (42% of the injection in PVT) labelled axons in IA (projection density 0.065).

Allen Mouse Brain Connectivity Atlas, experiment 184158996

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to AIp (Agranular insular area, posterior part) MBA:111 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in AIp (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to SI (Substantia innominata) MBA:342 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in SI (projection density 0.190).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

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ENTl (Entorhinal area, lateral part) MBA:918 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 640081415, an anterograde tracer injected into ENTl of a wild-type mouse (84% of the injection in ENTl) labelled axons in AAA (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 640081415

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 523705737, an anterograde tracer injected into AHN of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (16% of the injection in AHN) labelled axons in COAa (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 523705737

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ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286484879, an anterograde tracer injected into ENTm of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (100% of the injection in ENTm) labelled axons in LA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 286484879

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CEA (Central amygdalar nucleus) MBA:536 projects to IMD (Intermediodorsal nucleus of the thalamus) MBA:59 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in IMD (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

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ENTl (Entorhinal area, lateral part) MBA:918 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127397469, an anterograde tracer injected into ENTl of a wild-type mouse (71% of the injection in ENTl) labelled axons in BLA (projection density 0.078).

Allen Mouse Brain Connectivity Atlas, experiment 127397469

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CA1 (Field CA1) MBA:382 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175718634, an anterograde tracer injected into CA1 of a Etv1-CreERT2 mouse, the tracer Cre-dependent (76% of the injection in CA1) labelled axons in BMA (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 175718634

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DR (Dorsal nucleus raphe) MBA:872 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168300027, an anterograde tracer injected into DR of a Slc6a4-Cre_ET33 mouse, the tracer Cre-dependent (27% of the injection in DR) labelled axons in MEA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 168300027

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MEA (Medial amygdalar nucleus) MBA:403 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in PA (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

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SUB (Subiculum) MBA:502 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 506426778, an anterograde tracer injected into SUB of a Gpr26-Cre_KO250 mouse, the tracer Cre-dependent (52% of the injection in SUB) labelled axons in LA (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 506426778

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to VISpor (Postrhinal area) MBA:312782628 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in VISpor (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to RCH (Retrochiasmatic area) MBA:173 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in RCH (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

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AAA (Anterior amygdalar area) MBA:23 projects to SPA (Subparafascicular area) MBA:609 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in SPA (projection density 0.064).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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MEA (Medial amygdalar nucleus) MBA:403 projects to NTS (Nucleus of the solitary tract) MBA:651 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in NTS (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

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MEA (Medial amygdalar nucleus) MBA:403 projects to IntG (Intermediate geniculate nucleus) MBA:563807439 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in IntG (projection density 0.048).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 308641549, an anterograde tracer injected into VMH of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (38% of the injection in VMH) labelled axons in CEA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 308641549

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175106769, an anterograde tracer injected into VMH of a wild-type mouse (45% of the injection in VMH) labelled axons in MEA (projection density 0.090).

Allen Mouse Brain Connectivity Atlas, experiment 175106769

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MEA (Medial amygdalar nucleus) MBA:403 projects to IF (Interfascicular nucleus raphe) MBA:12 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in IF (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PF (Parafascicular nucleus) MBA:930 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PF (projection density 0.115).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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MEA (Medial amygdalar nucleus) MBA:403 projects to SLD (Sublaterodorsal nucleus) MBA:358 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in SLD (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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CEA (Central amygdalar nucleus) MBA:536 projects to EW (Edinger-Westphal nucleus) MBA:975 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 241279261, an anterograde tracer injected into CEA of a Tac2-IRES2-Cre mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in EW (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 241279261

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BST (Bed nuclei of the stria terminalis) MBA:351 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175739085, an anterograde tracer injected into BST of a Slc6a3-Cre mouse, the tracer Cre-dependent (95% of the injection in BST) labelled axons in BMA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 175739085

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in BLA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278510903, an anterograde tracer injected into PVT of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (51% of the injection in PVT) labelled axons in COAa (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 278510903

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to NLOT (Nucleus of the lateral olfactory tract) MBA:619 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in NLOT (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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CM (Central medial nucleus of the thalamus) MBA:599 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301538025, an anterograde tracer injected into CM of a Plxnd1-Cre_OG1 mouse, the tracer Cre-dependent (34% of the injection in CM) labelled axons in CEA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 301538025

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VTA (Ventral tegmental area) MBA:749 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 477927130, an anterograde tracer injected into VTA of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (23% of the injection in VTA) labelled axons in LA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 477927130

Made by an adapter reading a database (allen-connectivity@1.3.0).