A mesoscale connectome of the mouse brain

PA (Posterior amygdalar nucleus) MBA:780 projects to PS (Parastrial nucleus) MBA:1109 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304721447, an anterograde tracer injected into PA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (69% of the injection in PA) labelled axons in PS (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 304721447

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CEA (Central amygdalar nucleus) MBA:536 projects to STN (Subthalamic nucleus) MBA:470 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in STN (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

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TR (Postpiriform transition area) MBA:566 projects to HATA (Hippocampo-amygdalar transition area) MBA:589508447 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126653015, an anterograde tracer injected into TR of a wild-type mouse (99% of the injection in TR) labelled axons in HATA (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 126653015

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VTA (Ventral tegmental area) MBA:749 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165975096, an anterograde tracer injected into VTA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (17% of the injection in VTA) labelled axons in BLA (projection density 0.107).

Allen Mouse Brain Connectivity Atlas, experiment 165975096

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SI (Substantia innominata) MBA:342 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 138058320, an anterograde tracer injected into SI of a wild-type mouse (48% of the injection in SI) labelled axons in BLA (projection density 0.074).

Allen Mouse Brain Connectivity Atlas, experiment 138058320

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LSv (Lateral septal nucleus, ventral part) MBA:266 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167654731, an anterograde tracer injected into LSv of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (21% of the injection in LSv) labelled axons in AAA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 167654731

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CEA (Central amygdalar nucleus) MBA:536 projects to PST (Preparasubthalamic nucleus) MBA:356 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267152406, an anterograde tracer injected into CEA of a Crh-IRES-Cre_ZJH mouse, the tracer Cre-dependent (67% of the injection in CEA) labelled axons in PST (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 267152406

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 308641549, an anterograde tracer injected into VMH of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (38% of the injection in VMH) labelled axons in COAa (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 308641549

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PT (Parataenial nucleus) MBA:15 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176897793, an anterograde tracer injected into PT of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (66% of the injection in PT) labelled axons in BMA (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 176897793

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PVi (Periventricular hypothalamic nucleus, intermediate part) MBA:118 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in PVi (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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PT (Parataenial nucleus) MBA:15 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305449231, an anterograde tracer injected into PT of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (57% of the injection in PT) labelled axons in PA (projection density 0.075).

Allen Mouse Brain Connectivity Atlas, experiment 305449231

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DR (Dorsal nucleus raphe) MBA:872 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114155190, an anterograde tracer injected into DR of a Slc6a4-CreERT2_EZ13 mouse, the tracer Cre-dependent (63% of the injection in DR) labelled axons in BMA (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 114155190

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to TEa (Temporal association areas) MBA:541 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in TEa (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to AVP (Anteroventral preoptic nucleus) MBA:263 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in AVP (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to NLOT (Nucleus of the lateral olfactory tract) MBA:619 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267813932, an anterograde tracer injected into BMA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (38% of the injection in BMA) labelled axons in NLOT (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 267813932

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to MA (Magnocellular nucleus) MBA:298 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267813932, an anterograde tracer injected into BMA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (38% of the injection in BMA) labelled axons in MA (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 267813932

Made by an adapter reading a database (allen-connectivity@1.3.0).

RE (Nucleus of reuniens) MBA:181 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 310976160, an anterograde tracer injected into RE of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (35% of the injection in RE) labelled axons in COAa (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 310976160

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CEA (Central amygdalar nucleus) MBA:536 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in TR (projection density 0.055).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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MEA (Medial amygdalar nucleus) MBA:403 projects to PAA (Piriform-amygdalar area) MBA:788 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305124396, an anterograde tracer injected into MEA of a Gad2-IRES-Cre mouse, the tracer Cre-dependent (65% of the injection in MEA) labelled axons in PAA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 305124396

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to AVP (Anteroventral preoptic nucleus) MBA:263 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in AVP (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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CEA (Central amygdalar nucleus) MBA:536 projects to VPMpc (Ventral posteromedial nucleus of the thalamus, parvicellular part) MBA:741 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181889764, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (55% of the injection in CEA) labelled axons in VPMpc (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 181889764

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CEA (Central amygdalar nucleus) MBA:536 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in SO (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304617742, an anterograde tracer injected into DMH of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (12% of the injection in DMH) labelled axons in AAA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 304617742

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 204908781, an anterograde tracer injected into PVT of a Gal-Cre_KI87 mouse, the tracer Cre-dependent (52% of the injection in PVT) labelled axons in IA (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 204908781

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PAG (Periaqueductal gray) MBA:795 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182280207, an anterograde tracer injected into PAG of a Vipr2-Cre_KE2 mouse, the tracer Cre-dependent (32% of the injection in PAG) labelled axons in CEA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 182280207

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AIp (Agranular insular area, posterior part) MBA:111 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272827141, an anterograde tracer injected into AIp of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (53% of the injection in AIp) labelled axons in LA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 272827141

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CEA (Central amygdalar nucleus) MBA:536 projects to BAC (Bed nucleus of the anterior commissure) MBA:287 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in BAC (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 313325371, an anterograde tracer injected into VMH of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (18% of the injection in VMH) labelled axons in CEA (projection density 0.127).

Allen Mouse Brain Connectivity Atlas, experiment 313325371

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ADP (Anterodorsal preoptic nucleus) MBA:72 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in ADP (projection density 0.211).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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MEA (Medial amygdalar nucleus) MBA:403 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in MPO (projection density 0.085).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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MEA (Medial amygdalar nucleus) MBA:403 projects to AId (Agranular insular area, dorsal part) MBA:104 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in AId (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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MRN (Midbrain reticular nucleus) MBA:128 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304761539, an anterograde tracer injected into MRN of a Th-Cre_FI172 mouse, the tracer Cre-dependent (31% of the injection in MRN) labelled axons in LA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 304761539

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MEA (Medial amygdalar nucleus) MBA:403 projects to TU (Tuberal nucleus) MBA:614 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in TU (projection density 0.074).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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MEA (Medial amygdalar nucleus) MBA:403 projects to PD (Posterodorsal preoptic nucleus) MBA:914 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in PD (projection density 0.072).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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IF (Interfascicular nucleus raphe) MBA:12 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301732962, an anterograde tracer injected into IF of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (21% of the injection in IF) labelled axons in COAp (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 301732962

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ENTl (Entorhinal area, lateral part) MBA:918 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 232311959, an anterograde tracer injected into ENTl of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (76% of the injection in ENTl) labelled axons in IA (projection density 0.084).

Allen Mouse Brain Connectivity Atlas, experiment 232311959

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TU (Tuberal nucleus) MBA:614 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112228391, an anterograde tracer injected into TU of a wild-type mouse (31% of the injection in TU) labelled axons in CEA (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 112228391

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MEA (Medial amygdalar nucleus) MBA:403 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in TR (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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MEA (Medial amygdalar nucleus) MBA:403 projects to BST (Bed nuclei of the stria terminalis) MBA:351 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in BST (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

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PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 586054741, an anterograde tracer injected into PIL of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (49% of the injection in PIL) labelled axons in MEA (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 586054741

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CEA (Central amygdalar nucleus) MBA:536 projects to EW (Edinger-Westphal nucleus) MBA:975 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in EW (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

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VTA (Ventral tegmental area) MBA:749 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165975096, an anterograde tracer injected into VTA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (17% of the injection in VTA) labelled axons in IA (projection density 0.081).

Allen Mouse Brain Connectivity Atlas, experiment 165975096

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AOB (Accessory olfactory bulb) MBA:151 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267760731, an anterograde tracer injected into AOB of a Efr3a-Cre_NO108 mouse, the tracer Cre-dependent (46% of the injection in AOB) labelled axons in COAa (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 267760731

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MEA (Medial amygdalar nucleus) MBA:403 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293469501, an anterograde tracer injected into MEA of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (77% of the injection in MEA) labelled axons in IA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 293469501

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RE (Nucleus of reuniens) MBA:181 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175374982, an anterograde tracer injected into RE of a wild-type mouse (64% of the injection in RE) labelled axons in BA (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 175374982

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IPN (Interpeduncular nucleus) MBA:100 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267538735, an anterograde tracer injected into IPN of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (20% of the injection in IPN) labelled axons in COAa (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 267538735

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to IG (Induseum griseum) MBA:19 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 273028004, an anterograde tracer injected into BMA of a wild-type mouse (68% of the injection in BMA) labelled axons in IG (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 273028004

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ENTl (Entorhinal area, lateral part) MBA:918 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126116848, an anterograde tracer injected into ENTl of a wild-type mouse (100% of the injection in ENTl) labelled axons in BLA (projection density 0.165).

Allen Mouse Brain Connectivity Atlas, experiment 126116848

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PH (Posterior hypothalamic nucleus) MBA:946 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175374275, an anterograde tracer injected into PH of a wild-type mouse (32% of the injection in PH) labelled axons in IA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 175374275

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CEA (Central amygdalar nucleus) MBA:536 projects to PST (Preparasubthalamic nucleus) MBA:356 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in PST (projection density 0.121).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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