A mesoscale connectome of the mouse brain

ILA (Infralimbic area) MBA:44 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 283019341, an anterograde tracer injected into ILA of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (42% of the injection in ILA) labelled axons in AAA (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 283019341

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CP (Caudoputamen) MBA:672 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 513775257, an anterograde tracer injected into CP of a Ntng2-IRES2-Cre mouse, the tracer Cre-dependent (36% of the injection in CP) labelled axons in IA (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 513775257

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CEA (Central amygdalar nucleus) MBA:536 projects to ISN (Inferior salivatory nucleus) MBA:106 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120281646, an anterograde tracer injected into CEA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (98% of the injection in CEA) labelled axons in ISN (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 120281646

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 313324664, an anterograde tracer injected into PVT of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (52% of the injection in PVT) labelled axons in MEA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 313324664

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ENTl (Entorhinal area, lateral part) MBA:918 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 516278420, an anterograde tracer injected into ENTl of a Chrnb4-Cre_OL57 mouse, the tracer Cre-dependent (100% of the injection in ENTl) labelled axons in TR (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 516278420

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ENTl (Entorhinal area, lateral part) MBA:918 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 232311959, an anterograde tracer injected into ENTl of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (76% of the injection in ENTl) labelled axons in COAp (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 232311959

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to STN (Subthalamic nucleus) MBA:470 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277710753, an anterograde tracer injected into BLA of a wild-type mouse (49% of the injection in BLA) labelled axons in STN (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 277710753

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DR (Dorsal nucleus raphe) MBA:872 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 128055110, an anterograde tracer injected into DR of a Slc6a4-Cre_ET33 mouse, the tracer Cre-dependent (65% of the injection in DR) labelled axons in COAa (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 128055110

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CEA (Central amygdalar nucleus) MBA:536 projects to LHA (Lateral hypothalamic area) MBA:194 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in LHA (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

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MEA (Medial amygdalar nucleus) MBA:403 projects to AIv (Agranular insular area, ventral part) MBA:119 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in AIv (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

VTA (Ventral tegmental area) MBA:749 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127798146, an anterograde tracer injected into VTA of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (45% of the injection in VTA) labelled axons in IA (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 127798146

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ENTl (Entorhinal area, lateral part) MBA:918 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 142656218, an anterograde tracer injected into ENTl of a wild-type mouse (50% of the injection in ENTl) labelled axons in BMA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 142656218

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MEA (Medial amygdalar nucleus) MBA:403 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in COAp (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

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CA1 (Field CA1) MBA:382 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286610923, an anterograde tracer injected into CA1 of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (85% of the injection in CA1) labelled axons in IA (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 286610923

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MEA (Medial amygdalar nucleus) MBA:403 projects to PVHd (Paraventricular hypothalamic nucleus, descending division) MBA:63 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in PVHd (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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CEA (Central amygdalar nucleus) MBA:536 projects to MD (Mediodorsal nucleus of thalamus) MBA:362 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in MD (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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MEA (Medial amygdalar nucleus) MBA:403 projects to PeF (Perifornical nucleus) MBA:576073704 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in PeF (projection density 0.096).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to ASO (Accessory supraoptic group) MBA:332 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in ASO (projection density 0.066).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

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MEA (Medial amygdalar nucleus) MBA:403 projects to VPLpc (Ventral posterolateral nucleus of the thalamus, parvicellular part) MBA:725 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in VPLpc (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to TU (Tuberal nucleus) MBA:614 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in TU (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ECT (Ectorhinal area) MBA:895 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in ECT (projection density 0.077).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

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PIR (Piriform area) MBA:961 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127907465, an anterograde tracer injected into PIR of a wild-type mouse (89% of the injection in PIR) labelled axons in CEA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 127907465

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in AAA (projection density 0.057).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to SUM (Supramammillary nucleus) MBA:525 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in SUM (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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RE (Nucleus of reuniens) MBA:181 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 174957972, an anterograde tracer injected into RE of a wild-type mouse (25% of the injection in RE) labelled axons in TR (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 174957972

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VTA (Ventral tegmental area) MBA:749 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 156314762, an anterograde tracer injected into VTA of a Th-IRES-CreER mouse, the tracer Cre-dependent (38% of the injection in VTA) labelled axons in CEA (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 156314762

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PIR (Piriform area) MBA:961 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146857301, an anterograde tracer injected into PIR of a wild-type mouse (79% of the injection in PIR) labelled axons in AAA (projection density 0.172).

Allen Mouse Brain Connectivity Atlas, experiment 146857301

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MEA (Medial amygdalar nucleus) MBA:403 projects to SBPV (Subparaventricular zone) MBA:347 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in SBPV (projection density 0.061).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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MEA (Medial amygdalar nucleus) MBA:403 projects to PST (Preparasubthalamic nucleus) MBA:356 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in PST (projection density 0.099).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to AIv (Agranular insular area, ventral part) MBA:119 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267150949, an anterograde tracer injected into COAp of a Slc17a7-IRES2-Cre mouse, the tracer Cre-dependent (53% of the injection in COAp) labelled axons in AIv (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 267150949

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MEA (Medial amygdalar nucleus) MBA:403 projects to PD (Posterodorsal preoptic nucleus) MBA:914 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170946889, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (55% of the injection in MEA) labelled axons in PD (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 170946889

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TU (Tuberal nucleus) MBA:614 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112228391, an anterograde tracer injected into TU of a wild-type mouse (31% of the injection in TU) labelled axons in IA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 112228391

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CA1 (Field CA1) MBA:382 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286610216, an anterograde tracer injected into CA1 of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (83% of the injection in CA1) labelled axons in COAa (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 286610216

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AIp (Agranular insular area, posterior part) MBA:111 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in AIp (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to B (Barrington's nucleus) MBA:280 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in B (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to VTA (Ventral tegmental area) MBA:749 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in VTA (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

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MEA (Medial amygdalar nucleus) MBA:403 projects to AVP (Anteroventral preoptic nucleus) MBA:263 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in AVP (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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AM (Anteromedial nucleus) MBA:127 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146658170, an anterograde tracer injected into AM of a wild-type mouse (43% of the injection in AM) labelled axons in BLA (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 146658170

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DR (Dorsal nucleus raphe) MBA:872 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 128055110, an anterograde tracer injected into DR of a Slc6a4-Cre_ET33 mouse, the tracer Cre-dependent (65% of the injection in DR) labelled axons in CEA (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 128055110

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in TR (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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BST (Bed nuclei of the stria terminalis) MBA:351 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167026321, an anterograde tracer injected into BST of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (25% of the injection in BST) labelled axons in IA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 167026321

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CEA (Central amygdalar nucleus) MBA:536 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in MPO (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PSTN (Parasubthalamic nucleus) MBA:364 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in PSTN (projection density 0.110).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to PAR (Parasubiculum) MBA:843 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in PAR (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 308641549, an anterograde tracer injected into VMH of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (38% of the injection in VMH) labelled axons in LA (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 308641549

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175106053, an anterograde tracer injected into AHN of a wild-type mouse (20% of the injection in AHN) labelled axons in IA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 175106053

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ENTl (Entorhinal area, lateral part) MBA:918 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 642967852, an anterograde tracer injected into ENTl of a wild-type mouse (98% of the injection in ENTl) labelled axons in LA (projection density 0.071).

Allen Mouse Brain Connectivity Atlas, experiment 642967852

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 508775240, an anterograde tracer injected into BMA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (61% of the injection in BMA) labelled axons in BLA (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 508775240

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AIv (Agranular insular area, ventral part) MBA:119 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 166153483, an anterograde tracer injected into AIv of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (57% of the injection in AIv) labelled axons in CEA (projection density 0.069).

Allen Mouse Brain Connectivity Atlas, experiment 166153483

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CEA (Central amygdalar nucleus) MBA:536 projects to VPMpc (Ventral posteromedial nucleus of the thalamus, parvicellular part) MBA:741 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in VPMpc (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

Made by an adapter reading a database (allen-connectivity@1.3.0).