A mesoscale connectome of the mouse brain

PT (Parataenial nucleus) MBA:15 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159432479, an anterograde tracer injected into PT of a Cck-IRES-Cre mouse, the tracer Cre-dependent (30% of the injection in PT) labelled axons in LA (projection density 0.077).

Allen Mouse Brain Connectivity Atlas, experiment 159432479

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to SPA (Subparafascicular area) MBA:609 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in SPA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

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MEA (Medial amygdalar nucleus) MBA:403 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in MPO (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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PIR (Piriform area) MBA:961 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286728190, an anterograde tracer injected into PIR of a Cux2-CreERT2 mouse, the tracer Cre-dependent (55% of the injection in PIR) labelled axons in LA (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 286728190

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LHA (Lateral hypothalamic area) MBA:194 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860092, an anterograde tracer injected into LHA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (36% of the injection in LHA) labelled axons in MEA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 170860092

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PB (Parabrachial nucleus) MBA:867 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183284388, an anterograde tracer injected into PB of a Calb2-IRES-Cre mouse, the tracer Cre-dependent (91% of the injection in PB) labelled axons in TR (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 183284388

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MEA (Medial amygdalar nucleus) MBA:403 projects to MDRNd (Medullary reticular nucleus, dorsal part) MBA:1098 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in MDRNd (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to EPv (Endopiriform nucleus, ventral part) MBA:966 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in EPv (projection density 0.102).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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CEA (Central amygdalar nucleus) MBA:536 projects to PVHd (Paraventricular hypothalamic nucleus, descending division) MBA:63 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in PVHd (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

Made by an adapter reading a database (allen-connectivity@1.3.0).

AHN (Anterior hypothalamic nucleus) MBA:88 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 523705737, an anterograde tracer injected into AHN of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (16% of the injection in AHN) labelled axons in PA (projection density 0.093).

Allen Mouse Brain Connectivity Atlas, experiment 523705737

Made by an adapter reading a database (allen-connectivity@1.3.0).

SI (Substantia innominata) MBA:342 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146045723, an anterograde tracer injected into SI of a wild-type mouse (39% of the injection in SI) labelled axons in BA (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 146045723

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CEA (Central amygdalar nucleus) MBA:536 projects to BST (Bed nuclei of the stria terminalis) MBA:351 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in BST (projection density 0.063).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PoT (Posterior triangular thalamic nucleus) MBA:563807435 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in PoT (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to VTA (Ventral tegmental area) MBA:749 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in VTA (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

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SI (Substantia innominata) MBA:342 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157659671, an anterograde tracer injected into SI of a wild-type mouse (45% of the injection in SI) labelled axons in COAa (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 157659671

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ARH (Arcuate hypothalamic nucleus) MBA:223 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175738378, an anterograde tracer injected into ARH of a Pomc-Cre_BL mouse, the tracer Cre-dependent (44% of the injection in ARH) labelled axons in MEA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 175738378

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to TMv (Tuberomammillary nucleus, ventral part) MBA:1 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in TMv (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to OT (Olfactory tubercle) MBA:754 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in OT (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PARN (Parvicellular reticular nucleus) MBA:852 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in PARN (projection density 0.073).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to EPv (Endopiriform nucleus, ventral part) MBA:966 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in EPv (projection density 0.064).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PAA (Piriform-amygdalar area) MBA:788 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in PAA (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

PAG (Periaqueductal gray) MBA:795 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 287247978, an anterograde tracer injected into PAG of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (90% of the injection in PAG) labelled axons in AAA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 287247978

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PAG (Periaqueductal gray) MBA:795 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272699357, an anterograde tracer injected into PAG of a Th-Cre_FI172 mouse, the tracer Cre-dependent (69% of the injection in PAG) labelled axons in BLA (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 272699357

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVpo (Periventricular hypothalamic nucleus, preoptic part) MBA:133 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in PVpo (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to RM (Nucleus raphe magnus) MBA:206 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in RM (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

SI (Substantia innominata) MBA:342 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 147632458, an anterograde tracer injected into SI of a wild-type mouse (45% of the injection in SI) labelled axons in CEA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 147632458

Made by an adapter reading a database (allen-connectivity@1.3.0).

RE (Nucleus of reuniens) MBA:181 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278500868, an anterograde tracer injected into RE of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (26% of the injection in RE) labelled axons in IA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 278500868

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ORBm (Orbital area, medial part) MBA:731 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126860974, an anterograde tracer injected into ORBm of a wild-type mouse (78% of the injection in ORBm) labelled axons in BLA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 126860974

Made by an adapter reading a database (allen-connectivity@1.3.0).

AHN (Anterior hypothalamic nucleus) MBA:88 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159375743, an anterograde tracer injected into AHN of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (53% of the injection in AHN) labelled axons in PA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 159375743

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PSTN (Parasubthalamic nucleus) MBA:364 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in PSTN (projection density 0.048).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

Made by an adapter reading a database (allen-connectivity@1.3.0).

ORBl (Orbital area, lateral part) MBA:723 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180709230, an anterograde tracer injected into ORBl of a wild-type mouse (34% of the injection in ORBl) labelled axons in LA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 180709230

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IPN (Interpeduncular nucleus) MBA:100 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 171019710, an anterograde tracer injected into IPN of a Slc32a1-IRES-Cre mouse, the tracer Cre-dependent (26% of the injection in IPN) labelled axons in AAA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 171019710

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to BAC (Bed nucleus of the anterior commissure) MBA:287 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in BAC (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to ASO (Accessory supraoptic group) MBA:332 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in ASO (projection density 0.069).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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VISC (Visceral area) MBA:677 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180436360, an anterograde tracer injected into VISC of a wild-type mouse (30% of the injection in VISC) labelled axons in COAa (projection density 0.131).

Allen Mouse Brain Connectivity Atlas, experiment 180436360

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PB (Parabrachial nucleus) MBA:867 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in PB (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in MPO (projection density 0.095).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to VMPO (Ventromedial preoptic nucleus) MBA:576073699 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in VMPO (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146984209, an anterograde tracer injected into PIR of a wild-type mouse (62% of the injection in PIR) labelled axons in IA (projection density 0.104).

Allen Mouse Brain Connectivity Atlas, experiment 146984209

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in IA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

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ENTl (Entorhinal area, lateral part) MBA:918 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126116848, an anterograde tracer injected into ENTl of a wild-type mouse (100% of the injection in ENTl) labelled axons in COAp (projection density 0.099).

Allen Mouse Brain Connectivity Atlas, experiment 126116848

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MEA (Medial amygdalar nucleus) MBA:403 projects to MT (Medial terminal nucleus of the accessory optic tract) MBA:58 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in MT (projection density 0.088).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SUM (Supramammillary nucleus) MBA:525 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286303000, an anterograde tracer injected into MEA of a Slc6a3-Cre mouse, the tracer Cre-dependent (97% of the injection in MEA) labelled axons in SUM (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 286303000

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SCm (Superior colliculus, motor related) MBA:294 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in SCm (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

RE (Nucleus of reuniens) MBA:181 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265286700, an anterograde tracer injected into RE of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (49% of the injection in RE) labelled axons in BMA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 265286700

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VISal (Anterolateral visual area) MBA:402 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in VISal (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

SUB (Subiculum) MBA:502 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 506426778, an anterograde tracer injected into SUB of a Gpr26-Cre_KO250 mouse, the tracer Cre-dependent (52% of the injection in SUB) labelled axons in IA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 506426778

Made by an adapter reading a database (allen-connectivity@1.3.0).

VISC (Visceral area) MBA:677 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 174361746, an anterograde tracer injected into VISC of a wild-type mouse (49% of the injection in VISC) labelled axons in LA (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 174361746

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127907465, an anterograde tracer injected into PIR of a wild-type mouse (89% of the injection in PIR) labelled axons in COAp (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 127907465

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PIR (Piriform area) MBA:961 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in PIR (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

Made by an adapter reading a database (allen-connectivity@1.3.0).