A mesoscale connectome of the mouse brain

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to CA1 (Field CA1) MBA:382 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in CA1 (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in DMH (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ADP (Anterodorsal preoptic nucleus) MBA:72 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in ADP (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

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MEA (Medial amygdalar nucleus) MBA:403 projects to PVH (Paraventricular hypothalamic nucleus) MBA:38 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in PVH (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

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PIR (Piriform area) MBA:961 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 131068390, an anterograde tracer injected into PIR of a wild-type mouse (95% of the injection in PIR) labelled axons in PA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 131068390

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PeF (Perifornical nucleus) MBA:576073704 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in PeF (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

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AAA (Anterior amygdalar area) MBA:23 projects to IV (Trochlear nucleus) MBA:115 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in IV (projection density 0.179).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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CEA (Central amygdalar nucleus) MBA:536 projects to ECT (Ectorhinal area) MBA:895 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in ECT (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to RH (Rhomboid nucleus) MBA:189 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in RH (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

ZI (Zona incerta) MBA:797 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113095845, an anterograde tracer injected into ZI of a wild-type mouse (81% of the injection in ZI) labelled axons in COAa (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 113095845

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PSTN (Parasubthalamic nucleus) MBA:364 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in PSTN (projection density 0.072).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PD (Posterodorsal preoptic nucleus) MBA:914 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in PD (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to Xi (Xiphoid thalamic nucleus) MBA:560581559 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in Xi (projection density 0.079).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

VISC (Visceral area) MBA:677 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180917660, an anterograde tracer injected into VISC of a wild-type mouse (60% of the injection in VISC) labelled axons in BA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 180917660

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in MPO (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVT (Paraventricular nucleus of the thalamus) MBA:149 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in PVT (projection density 0.066).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in IA (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SSp-m (Primary somatosensory area, mouth) MBA:345 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in SSp-m (projection density 0.054).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to AIp (Agranular insular area, posterior part) MBA:111 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in AIp (projection density 0.055).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to PS (Parastrial nucleus) MBA:1109 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in PS (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

Made by an adapter reading a database (allen-connectivity@1.3.0).

PH (Posterior hypothalamic nucleus) MBA:946 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175374275, an anterograde tracer injected into PH of a wild-type mouse (32% of the injection in PH) labelled axons in BMA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 175374275

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to EPv (Endopiriform nucleus, ventral part) MBA:966 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 508775240, an anterograde tracer injected into BMA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (61% of the injection in BMA) labelled axons in EPv (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 508775240

Made by an adapter reading a database (allen-connectivity@1.3.0).

BST (Bed nuclei of the stria terminalis) MBA:351 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304760810, an anterograde tracer injected into BST of a Sst-IRES-Cre mouse, the tracer Cre-dependent (43% of the injection in BST) labelled axons in CEA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 304760810

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to SI (Substantia innominata) MBA:342 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267150949, an anterograde tracer injected into COAp of a Slc17a7-IRES2-Cre mouse, the tracer Cre-dependent (53% of the injection in COAp) labelled axons in SI (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 267150949

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PS (Parastrial nucleus) MBA:1109 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in PS (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

Made by an adapter reading a database (allen-connectivity@1.3.0).

VISC (Visceral area) MBA:677 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180074890, an anterograde tracer injected into VISC of a wild-type mouse (85% of the injection in VISC) labelled axons in AAA (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 180074890

Made by an adapter reading a database (allen-connectivity@1.3.0).

PAG (Periaqueductal gray) MBA:795 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 266500714, an anterograde tracer injected into PAG of a Th-Cre_FI172 mouse, the tracer Cre-dependent (49% of the injection in PAG) labelled axons in IA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 266500714

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SUB (Subiculum) MBA:502 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 288322091, an anterograde tracer injected into SUB of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (43% of the injection in SUB) labelled axons in LA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 288322091

Made by an adapter reading a database (allen-connectivity@1.3.0).

VTA (Ventral tegmental area) MBA:749 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 171021829, an anterograde tracer injected into VTA of a Cck-IRES-Cre mouse, the tracer Cre-dependent (34% of the injection in VTA) labelled axons in BLA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 171021829

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PT (Parataenial nucleus) MBA:15 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in PT (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127907465, an anterograde tracer injected into PIR of a wild-type mouse (89% of the injection in PIR) labelled axons in COAa (projection density 0.150).

Allen Mouse Brain Connectivity Atlas, experiment 127907465

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183225830, an anterograde tracer injected into PVT of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (54% of the injection in PVT) labelled axons in BLA (projection density 0.098).

Allen Mouse Brain Connectivity Atlas, experiment 183225830

Made by an adapter reading a database (allen-connectivity@1.3.0).

PF (Parafascicular nucleus) MBA:930 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263785543, an anterograde tracer injected into PF of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (16% of the injection in PF) labelled axons in BLA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 263785543

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SPFp (Subparafascicular nucleus, parvicellular part) MBA:422 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in SPFp (projection density 0.095).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SPA (Subparafascicular area) MBA:609 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in SPA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293469501, an anterograde tracer injected into MEA of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (77% of the injection in MEA) labelled axons in COAp (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 293469501

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to AHN (Anterior hypothalamic nucleus) MBA:88 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in AHN (projection density 0.109).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

Made by an adapter reading a database (allen-connectivity@1.3.0).

SI (Substantia innominata) MBA:342 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 299245589, an anterograde tracer injected into SI of a Gad2-IRES-Cre mouse, the tracer Cre-dependent (28% of the injection in SI) labelled axons in COAp (projection density 0.048).

Allen Mouse Brain Connectivity Atlas, experiment 299245589

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146857301, an anterograde tracer injected into PIR of a wild-type mouse (79% of the injection in PIR) labelled axons in PA (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 146857301

Made by an adapter reading a database (allen-connectivity@1.3.0).

LHA (Lateral hypothalamic area) MBA:194 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114046440, an anterograde tracer injected into LHA of a wild-type mouse (40% of the injection in LHA) labelled axons in AAA (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 114046440

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to RR (Midbrain reticular nucleus, retrorubral area) MBA:246 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in RR (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in BA (projection density 0.324).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272414403, an anterograde tracer injected into ENTl of a wild-type mouse (71% of the injection in ENTl) labelled axons in LA (projection density 0.071).

Allen Mouse Brain Connectivity Atlas, experiment 272414403

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to EW (Edinger-Westphal nucleus) MBA:975 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in EW (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to TU (Tuberal nucleus) MBA:614 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in TU (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PD (Posterodorsal preoptic nucleus) MBA:914 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PD (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

ACB (Nucleus accumbens) MBA:56 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167904966, an anterograde tracer injected into ACB of a Drd2-Cre_ER44 mouse, the tracer Cre-dependent (57% of the injection in ACB) labelled axons in CEA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 167904966

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to AIp (Agranular insular area, posterior part) MBA:111 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in AIp (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301209502, an anterograde tracer injected into PVT of a Efr3a-Cre_NO108 mouse, the tracer Cre-dependent (48% of the injection in PVT) labelled axons in BLA (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 301209502

Made by an adapter reading a database (allen-connectivity@1.3.0).

BST (Bed nuclei of the stria terminalis) MBA:351 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267763584, an anterograde tracer injected into BST of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (69% of the injection in BST) labelled axons in BMA (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 267763584

Made by an adapter reading a database (allen-connectivity@1.3.0).