A mesoscale connectome of the mouse brain

ENTl (Entorhinal area, lateral part) MBA:918 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 640081415, an anterograde tracer injected into ENTl of a wild-type mouse (84% of the injection in ENTl) labelled axons in BLA (projection density 0.067).

Allen Mouse Brain Connectivity Atlas, experiment 640081415

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CEA (Central amygdalar nucleus) MBA:536 projects to SNr (Substantia nigra, reticular part) MBA:381 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in SNr (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

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MEA (Medial amygdalar nucleus) MBA:403 projects to BST (Bed nuclei of the stria terminalis) MBA:351 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146985623, an anterograde tracer injected into MEA of a wild-type mouse (94% of the injection in MEA) labelled axons in BST (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 146985623

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MRN (Midbrain reticular nucleus) MBA:128 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113400134, an anterograde tracer injected into MRN of a wild-type mouse (17% of the injection in MRN) labelled axons in CEA (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 113400134

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PB (Parabrachial nucleus) MBA:867 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in PB (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

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ENTl (Entorhinal area, lateral part) MBA:918 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 561916513, an anterograde tracer injected into ENTl of a Htr1a-IRES2-Cre mouse, the tracer Cre-dependent (62% of the injection in ENTl) labelled axons in LA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 561916513

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VISpor (Postrhinal area) MBA:312782628 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 166083557, an anterograde tracer injected into VISpor of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (86% of the injection in VISpor) labelled axons in LA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 166083557

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AAA (Anterior amygdalar area) MBA:23 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in LA (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to TMv (Tuberomammillary nucleus, ventral part) MBA:1 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in TMv (projection density 0.072).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SBPV (Subparaventricular zone) MBA:347 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in SBPV (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

AAA (Anterior amygdalar area) MBA:23 projects to IF (Interfascicular nucleus raphe) MBA:12 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in IF (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

PH (Posterior hypothalamic nucleus) MBA:946 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127710392, an anterograde tracer injected into PH of a wild-type mouse (31% of the injection in PH) labelled axons in CEA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 127710392

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CEA (Central amygdalar nucleus) MBA:536 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in TR (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

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AM (Anteromedial nucleus) MBA:127 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146658170, an anterograde tracer injected into AM of a wild-type mouse (43% of the injection in AM) labelled axons in LA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 146658170

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CA1 (Field CA1) MBA:382 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 549203025, an anterograde tracer injected into CA1 of a Oxtr-T2A-Cre mouse, the tracer Cre-dependent (47% of the injection in CA1) labelled axons in MEA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 549203025

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to ORBm (Orbital area, medial part) MBA:731 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in ORBm (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to MPN (Medial preoptic nucleus) MBA:515 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in MPN (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

Made by an adapter reading a database (allen-connectivity@1.3.0).

IMD (Intermediodorsal nucleus of the thalamus) MBA:59 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182185289, an anterograde tracer injected into IMD of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (57% of the injection in IMD) labelled axons in CEA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 182185289

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MEA (Medial amygdalar nucleus) MBA:403 projects to PR (Perireunensis nucleus) MBA:1077 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in PR (projection density 0.054).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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MD (Mediodorsal nucleus of thalamus) MBA:362 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 166264185, an anterograde tracer injected into MD of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (36% of the injection in MD) labelled axons in BLA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 166264185

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in SO (projection density 0.106).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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MS (Medial septal nucleus) MBA:564 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 100141597, an anterograde tracer injected into MS of a wild-type mouse (58% of the injection in MS) labelled axons in IA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 100141597

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to LPO (Lateral preoptic area) MBA:226 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267150949, an anterograde tracer injected into COAp of a Slc17a7-IRES2-Cre mouse, the tracer Cre-dependent (53% of the injection in COAp) labelled axons in LPO (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 267150949

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to SI (Substantia innominata) MBA:342 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 508775240, an anterograde tracer injected into BMA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (61% of the injection in BMA) labelled axons in SI (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 508775240

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AIv (Agranular insular area, ventral part) MBA:119 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in AIv (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

PT (Parataenial nucleus) MBA:15 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159331462, an anterograde tracer injected into PT of a Cck-IRES-Cre mouse, the tracer Cre-dependent (36% of the injection in PT) labelled axons in BLA (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 159331462

Made by an adapter reading a database (allen-connectivity@1.3.0).

SI (Substantia innominata) MBA:342 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 161460864, an anterograde tracer injected into SI of a Chat-IRES-Cre-neo mouse, the tracer Cre-dependent (50% of the injection in SI) labelled axons in BLA (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 161460864

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MEA (Medial amygdalar nucleus) MBA:403 projects to OT (Olfactory tubercle) MBA:754 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in OT (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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MEA (Medial amygdalar nucleus) MBA:403 projects to ORBm (Orbital area, medial part) MBA:731 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in ORBm (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to VISrl (Rostrolateral visual area) MBA:417 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in VISrl (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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CEA (Central amygdalar nucleus) MBA:536 projects to PPY (Parapyramidal nucleus) MBA:1069 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 241279261, an anterograde tracer injected into CEA of a Tac2-IRES2-Cre mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in PPY (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 241279261

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to OT (Olfactory tubercle) MBA:754 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in OT (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

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ILA (Infralimbic area) MBA:44 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 283019341, an anterograde tracer injected into ILA of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (42% of the injection in ILA) labelled axons in BMA (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 283019341

Made by an adapter reading a database (allen-connectivity@1.3.0).

LHA (Lateral hypothalamic area) MBA:194 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 117302771, an anterograde tracer injected into LHA of a wild-type mouse (43% of the injection in LHA) labelled axons in IA (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 117302771

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in COAa (projection density 0.070).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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RE (Nucleus of reuniens) MBA:181 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175019536, an anterograde tracer injected into RE of a wild-type mouse (17% of the injection in RE) labelled axons in AAA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 175019536

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MEA (Medial amygdalar nucleus) MBA:403 projects to AUDd (Dorsal auditory area) MBA:1011 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in AUDd (projection density 0.052).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to ILA (Infralimbic area) MBA:44 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in ILA (projection density 0.207).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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NLOT (Nucleus of the lateral olfactory tract) MBA:619 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 187269162, an anterograde tracer injected into NLOT of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (32% of the injection in NLOT) labelled axons in COAp (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 187269162

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PB (Parabrachial nucleus) MBA:867 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301016900, an anterograde tracer injected into PB of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (61% of the injection in PB) labelled axons in BMA (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 301016900

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CEA (Central amygdalar nucleus) MBA:536 projects to Acs5 (Accessory trigeminal nucleus) MBA:549009219 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in Acs5 (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

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AOB (Accessory olfactory bulb) MBA:151 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182686228, an anterograde tracer injected into AOB of a Cdhr1-Cre_KG66 mouse, the tracer Cre-dependent (62% of the injection in AOB) labelled axons in BA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 182686228

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PAG (Periaqueductal gray) MBA:795 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272699357, an anterograde tracer injected into PAG of a Th-Cre_FI172 mouse, the tracer Cre-dependent (69% of the injection in PAG) labelled axons in CEA (projection density 0.153).

Allen Mouse Brain Connectivity Atlas, experiment 272699357

Made by an adapter reading a database (allen-connectivity@1.3.0).

SUB (Subiculum) MBA:502 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127222723, an anterograde tracer injected into SUB of a wild-type mouse (30% of the injection in SUB) labelled axons in IA (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 127222723

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VISC (Visceral area) MBA:677 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180917660, an anterograde tracer injected into VISC of a wild-type mouse (60% of the injection in VISC) labelled axons in BLA (projection density 0.249).

Allen Mouse Brain Connectivity Atlas, experiment 180917660

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to LHA (Lateral hypothalamic area) MBA:194 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in LHA (projection density 0.077).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to AIv (Agranular insular area, ventral part) MBA:119 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in AIv (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

ORBvl (Orbital area, ventrolateral part) MBA:746 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167902586, an anterograde tracer injected into ORBvl of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (60% of the injection in ORBvl) labelled axons in AAA (projection density 0.064).

Allen Mouse Brain Connectivity Atlas, experiment 167902586

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CEA (Central amygdalar nucleus) MBA:536 projects to P5 (Peritrigeminal zone) MBA:549009215 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in P5 (projection density 0.075).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

LSv (Lateral septal nucleus, ventral part) MBA:266 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167654731, an anterograde tracer injected into LSv of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (21% of the injection in LSv) labelled axons in LA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 167654731

Made by an adapter reading a database (allen-connectivity@1.3.0).