A mesoscale connectome of the mouse brain

MEA (Medial amygdalar nucleus) MBA:403 projects to CP (Caudoputamen) MBA:672 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in CP (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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PB (Parabrachial nucleus) MBA:867 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 545427588, an anterograde tracer injected into PB of a Npr3-IRES2-Cre mouse, the tracer Cre-dependent (65% of the injection in PB) labelled axons in BMA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 545427588

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ORBm (Orbital area, medial part) MBA:731 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126860974, an anterograde tracer injected into ORBm of a wild-type mouse (78% of the injection in ORBm) labelled axons in LA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 126860974

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CEA (Central amygdalar nucleus) MBA:536 projects to IV (Trochlear nucleus) MBA:115 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in IV (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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CEA (Central amygdalar nucleus) MBA:536 projects to SSp-un (Primary somatosensory area, unassigned) MBA:182305689 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in SSp-un (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to EPv (Endopiriform nucleus, ventral part) MBA:966 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in EPv (projection density 0.059).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

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MEA (Medial amygdalar nucleus) MBA:403 projects to STN (Subthalamic nucleus) MBA:470 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in STN (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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MEA (Medial amygdalar nucleus) MBA:403 projects to MRN (Midbrain reticular nucleus) MBA:128 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in MRN (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277854208, an anterograde tracer injected into VMH of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (39% of the injection in VMH) labelled axons in LA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 277854208

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ENTl (Entorhinal area, lateral part) MBA:918 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127397469, an anterograde tracer injected into ENTl of a wild-type mouse (71% of the injection in ENTl) labelled axons in TR (projection density 0.227).

Allen Mouse Brain Connectivity Atlas, experiment 127397469

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TU (Tuberal nucleus) MBA:614 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264320076, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (15% of the injection in TU) labelled axons in CEA (projection density 0.098).

Allen Mouse Brain Connectivity Atlas, experiment 264320076

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MEA (Medial amygdalar nucleus) MBA:403 projects to IAM (Interanteromedial nucleus of the thalamus) MBA:1120 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in IAM (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

AIp (Agranular insular area, posterior part) MBA:111 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286775476, an anterograde tracer injected into AIp of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (43% of the injection in AIp) labelled axons in COAa (projection density 0.079).

Allen Mouse Brain Connectivity Atlas, experiment 286775476

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PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127396051, an anterograde tracer injected into PIL of a wild-type mouse (32% of the injection in PIL) labelled axons in COAa (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 127396051

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CEA (Central amygdalar nucleus) MBA:536 projects to I5 (Intertrigeminal nucleus) MBA:549009227 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in I5 (projection density 0.076).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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ENTl (Entorhinal area, lateral part) MBA:918 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286483411, an anterograde tracer injected into ENTl of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (94% of the injection in ENTl) labelled axons in IA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 286483411

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in IA (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in LA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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MEA (Medial amygdalar nucleus) MBA:403 projects to ZI (Zona incerta) MBA:797 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in ZI (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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CEA (Central amygdalar nucleus) MBA:536 projects to ACVII (Accessory facial motor nucleus) MBA:576 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in ACVII (projection density 0.052).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to SUT (Supratrigeminal nucleus) MBA:534 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in SUT (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SNc (Substantia nigra, compact part) MBA:374 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in SNc (projection density 0.061).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

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IF (Interfascicular nucleus raphe) MBA:12 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301732962, an anterograde tracer injected into IF of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (21% of the injection in IF) labelled axons in COAa (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 301732962

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RE (Nucleus of reuniens) MBA:181 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 310976160, an anterograde tracer injected into RE of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (35% of the injection in RE) labelled axons in LA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 310976160

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AId (Agranular insular area, dorsal part) MBA:104 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264076854, an anterograde tracer injected into AId of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (61% of the injection in AId) labelled axons in BLA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 264076854

Made by an adapter reading a database (allen-connectivity@1.3.0).

DR (Dorsal nucleus raphe) MBA:872 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 128055110, an anterograde tracer injected into DR of a Slc6a4-Cre_ET33 mouse, the tracer Cre-dependent (65% of the injection in DR) labelled axons in LA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 128055110

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VISC (Visceral area) MBA:677 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180074890, an anterograde tracer injected into VISC of a wild-type mouse (85% of the injection in VISC) labelled axons in BA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 180074890

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to TEa (Temporal association areas) MBA:541 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in TEa (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267813932, an anterograde tracer injected into BMA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (38% of the injection in BMA) labelled axons in SO (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 267813932

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PT (Parataenial nucleus) MBA:15 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 123662982, an anterograde tracer injected into PT of a wild-type mouse (28% of the injection in PT) labelled axons in CEA (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 123662982

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AAA (Anterior amygdalar area) MBA:23 projects to ACB (Nucleus accumbens) MBA:56 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in ACB (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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MPO (Medial preoptic area) MBA:523 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277800288, an anterograde tracer injected into MPO of a Ntrk1-IRES-Cre mouse, the tracer Cre-dependent (32% of the injection in MPO) labelled axons in PA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 277800288

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PH (Posterior hypothalamic nucleus) MBA:946 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in PH (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to LPO (Lateral preoptic area) MBA:226 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305645132, an anterograde tracer injected into MEA of a Htr3a-Cre_NO152 mouse, the tracer Cre-dependent (40% of the injection in MEA) labelled axons in LPO (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 305645132

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to ENTl (Entorhinal area, lateral part) MBA:918 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in ENTl (projection density 0.054).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to NDB (Diagonal band nucleus) MBA:596 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in NDB (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to ENTl (Entorhinal area, lateral part) MBA:918 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in ENTl (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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PMv (Ventral premammillary nucleus) MBA:1004 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 179904203, an anterograde tracer injected into PMv of a Lepr-IRES-Cre mouse, the tracer Cre-dependent (28% of the injection in PMv) labelled axons in PA (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 179904203

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PPN (Pedunculopontine nucleus) MBA:1052 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in PPN (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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AAA (Anterior amygdalar area) MBA:23 projects to RR (Midbrain reticular nucleus, retrorubral area) MBA:246 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in RR (projection density 0.099).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to DP (Dorsal peduncular area) MBA:814 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in DP (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PVpo (Periventricular hypothalamic nucleus, preoptic part) MBA:133 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in PVpo (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to AVP (Anteroventral preoptic nucleus) MBA:263 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in AVP (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to ASO (Accessory supraoptic group) MBA:332 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in ASO (projection density 0.068).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to EPv (Endopiriform nucleus, ventral part) MBA:966 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114249084, an anterograde tracer injected into COAp of a wild-type mouse (100% of the injection in COAp) labelled axons in EPv (projection density 0.080).

Allen Mouse Brain Connectivity Atlas, experiment 114249084

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AIp (Agranular insular area, posterior part) MBA:111 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286775476, an anterograde tracer injected into AIp of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (43% of the injection in AIp) labelled axons in IA (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 286775476

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to CM (Central medial nucleus of the thalamus) MBA:599 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in CM (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278510903, an anterograde tracer injected into PVT of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (51% of the injection in PVT) labelled axons in LA (projection density 0.137).

Allen Mouse Brain Connectivity Atlas, experiment 278510903

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 549361039, an anterograde tracer injected into MEA of a Oxtr-T2A-Cre mouse, the tracer Cre-dependent (61% of the injection in MEA) labelled axons in COAa (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 549361039

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to VISC (Visceral area) MBA:677 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in VISC (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

Made by an adapter reading a database (allen-connectivity@1.3.0).