A mesoscale connectome of the mouse brain

MEA (Medial amygdalar nucleus) MBA:403 projects to DMX (Dorsal motor nucleus of the vagus nerve) MBA:839 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in DMX (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

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MEA (Medial amygdalar nucleus) MBA:403 projects to BAC (Bed nucleus of the anterior commissure) MBA:287 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in BAC (projection density 0.099).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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MEA (Medial amygdalar nucleus) MBA:403 projects to RCH (Retrochiasmatic area) MBA:173 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in RCH (projection density 0.062).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

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CEA (Central amygdalar nucleus) MBA:536 projects to SNr (Substantia nigra, reticular part) MBA:381 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in SNr (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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VISli (Laterointermediate area) MBA:312782574 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112373830, an anterograde tracer injected into VISli of a wild-type mouse (41% of the injection in VISli) labelled axons in LA (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 112373830

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MEA (Medial amygdalar nucleus) MBA:403 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in BLA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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NDB (Diagonal band nucleus) MBA:596 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 177605425, an anterograde tracer injected into NDB of a Chat-IRES-Cre-neo mouse, the tracer Cre-dependent (62% of the injection in NDB) labelled axons in BA (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 177605425

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VISC (Visceral area) MBA:677 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180917660, an anterograde tracer injected into VISC of a wild-type mouse (60% of the injection in VISC) labelled axons in MEA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 180917660

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CA1 (Field CA1) MBA:382 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175718634, an anterograde tracer injected into CA1 of a Etv1-CreERT2 mouse, the tracer Cre-dependent (76% of the injection in CA1) labelled axons in BLA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 175718634

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PL (Prelimbic area) MBA:972 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263106036, an anterograde tracer injected into PL of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (46% of the injection in PL) labelled axons in BA (projection density 0.052).

Allen Mouse Brain Connectivity Atlas, experiment 263106036

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in CEA (projection density 0.191).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in MPO (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

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SI (Substantia innominata) MBA:342 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146045723, an anterograde tracer injected into SI of a wild-type mouse (39% of the injection in SI) labelled axons in IA (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 146045723

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PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127396051, an anterograde tracer injected into PIL of a wild-type mouse (32% of the injection in PIL) labelled axons in CEA (projection density 0.052).

Allen Mouse Brain Connectivity Atlas, experiment 127396051

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PIR (Piriform area) MBA:961 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 287225747, an anterograde tracer injected into PIR of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (89% of the injection in PIR) labelled axons in BA (projection density 0.063).

Allen Mouse Brain Connectivity Atlas, experiment 287225747

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AAA (Anterior amygdalar area) MBA:23 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in PA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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ZI (Zona incerta) MBA:797 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175018829, an anterograde tracer injected into ZI of a wild-type mouse (29% of the injection in ZI) labelled axons in LA (projection density 0.137).

Allen Mouse Brain Connectivity Atlas, experiment 175018829

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MEA (Medial amygdalar nucleus) MBA:403 projects to PF (Parafascicular nucleus) MBA:930 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PF (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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MEA (Medial amygdalar nucleus) MBA:403 projects to HATA (Hippocampo-amygdalar transition area) MBA:589508447 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in HATA (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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AId (Agranular insular area, dorsal part) MBA:104 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 262536037, an anterograde tracer injected into AId of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (84% of the injection in AId) labelled axons in CEA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 262536037

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PERI (Perirhinal area) MBA:922 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in PERI (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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MEA (Medial amygdalar nucleus) MBA:403 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in IA (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

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MEA (Medial amygdalar nucleus) MBA:403 projects to PMd (Dorsal premammillary nucleus) MBA:980 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PMd (projection density 0.091).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to EW (Edinger-Westphal nucleus) MBA:975 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in EW (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to LPO (Lateral preoptic area) MBA:226 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in LPO (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to NTS (Nucleus of the solitary tract) MBA:651 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in NTS (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to OT (Olfactory tubercle) MBA:754 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in OT (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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PH (Posterior hypothalamic nucleus) MBA:946 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 268208632, an anterograde tracer injected into PH of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (21% of the injection in PH) labelled axons in IA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 268208632

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MEA (Medial amygdalar nucleus) MBA:403 projects to PeF (Perifornical nucleus) MBA:576073704 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146985623, an anterograde tracer injected into MEA of a wild-type mouse (94% of the injection in MEA) labelled axons in PeF (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 146985623

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in SO (projection density 0.061).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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MD (Mediodorsal nucleus of thalamus) MBA:362 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272875132, an anterograde tracer injected into MD of a wild-type mouse (36% of the injection in MD) labelled axons in BLA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 272875132

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PAG (Periaqueductal gray) MBA:795 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114155923, an anterograde tracer injected into PAG of a wild-type mouse (65% of the injection in PAG) labelled axons in CEA (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 114155923

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264319363, an anterograde tracer injected into VMH of a Esr1-2A-Cre mouse, the tracer Cre-dependent (29% of the injection in VMH) labelled axons in BLA (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 264319363

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to SUM (Supramammillary nucleus) MBA:525 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in SUM (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

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TU (Tuberal nucleus) MBA:614 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264248605, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (36% of the injection in TU) labelled axons in IA (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 264248605

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182842391, an anterograde tracer injected into AHN of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (36% of the injection in AHN) labelled axons in CEA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 182842391

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VTA (Ventral tegmental area) MBA:749 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 477927130, an anterograde tracer injected into VTA of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (23% of the injection in VTA) labelled axons in TR (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 477927130

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MEA (Medial amygdalar nucleus) MBA:403 projects to PMv (Ventral premammillary nucleus) MBA:1004 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PMv (projection density 0.110).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to RR (Midbrain reticular nucleus, retrorubral area) MBA:246 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in RR (projection density 0.078).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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MEA (Medial amygdalar nucleus) MBA:403 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in COAp (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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RE (Nucleus of reuniens) MBA:181 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265286700, an anterograde tracer injected into RE of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (49% of the injection in RE) labelled axons in BLA (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 265286700

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MEA (Medial amygdalar nucleus) MBA:403 projects to VMH (Ventromedial hypothalamic nucleus) MBA:693 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293469501, an anterograde tracer injected into MEA of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (77% of the injection in MEA) labelled axons in VMH (projection density 0.048).

Allen Mouse Brain Connectivity Atlas, experiment 293469501

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PT (Parataenial nucleus) MBA:15 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167373923, an anterograde tracer injected into PT of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (75% of the injection in PT) labelled axons in LA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 167373923

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PIR (Piriform area) MBA:961 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 131068390, an anterograde tracer injected into PIR of a wild-type mouse (95% of the injection in PIR) labelled axons in COAa (projection density 0.286).

Allen Mouse Brain Connectivity Atlas, experiment 131068390

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VISC (Visceral area) MBA:677 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180436360, an anterograde tracer injected into VISC of a wild-type mouse (30% of the injection in VISC) labelled axons in COAp (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 180436360

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AON (Anterior olfactory nucleus) MBA:159 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304719312, an anterograde tracer injected into AON of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (84% of the injection in AON) labelled axons in BA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 304719312

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CEA (Central amygdalar nucleus) MBA:536 projects to RM (Nucleus raphe magnus) MBA:206 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in RM (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to ORBm (Orbital area, medial part) MBA:731 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in ORBm (projection density 0.146).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 478095541, an anterograde tracer injected into VMH of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (28% of the injection in VMH) labelled axons in TR (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 478095541

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CLA (Claustrum) MBA:583 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 485903475, an anterograde tracer injected into CLA of a Gnb4-IRES2-Cre mouse, the tracer Cre-dependent (40% of the injection in CLA) labelled axons in TR (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 485903475

Made by an adapter reading a database (allen-connectivity@1.3.0).