A mesoscale connectome of the mouse brain

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175106769, an anterograde tracer injected into VMH of a wild-type mouse (45% of the injection in VMH) labelled axons in BA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 175106769

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CP (Caudoputamen) MBA:672 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 513775257, an anterograde tracer injected into CP of a Ntng2-IRES2-Cre mouse, the tracer Cre-dependent (36% of the injection in CP) labelled axons in TR (projection density 0.068).

Allen Mouse Brain Connectivity Atlas, experiment 513775257

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CEA (Central amygdalar nucleus) MBA:536 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in AAA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

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NLOT (Nucleus of the lateral olfactory tract) MBA:619 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 187269162, an anterograde tracer injected into NLOT of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (32% of the injection in NLOT) labelled axons in BA (projection density 0.078).

Allen Mouse Brain Connectivity Atlas, experiment 187269162

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PL (Prelimbic area) MBA:972 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278433737, an anterograde tracer injected into PL of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (77% of the injection in PL) labelled axons in CEA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 278433737

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CEA (Central amygdalar nucleus) MBA:536 projects to PMv (Ventral premammillary nucleus) MBA:1004 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in PMv (projection density 0.069).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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DR (Dorsal nucleus raphe) MBA:872 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168300027, an anterograde tracer injected into DR of a Slc6a4-Cre_ET33 mouse, the tracer Cre-dependent (27% of the injection in DR) labelled axons in LA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 168300027

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to LPO (Lateral preoptic area) MBA:226 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in LPO (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

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AOB (Accessory olfactory bulb) MBA:151 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120812686, an anterograde tracer injected into AOB of a wild-type mouse (54% of the injection in AOB) labelled axons in COAp (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 120812686

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PIR (Piriform area) MBA:961 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157654069, an anterograde tracer injected into PIR of a wild-type mouse (55% of the injection in PIR) labelled axons in BA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 157654069

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LHA (Lateral hypothalamic area) MBA:194 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305379705, an anterograde tracer injected into LHA of a Slc32a1-IRES-Cre mouse, the tracer Cre-dependent (32% of the injection in LHA) labelled axons in CEA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 305379705

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114249084, an anterograde tracer injected into COAp of a wild-type mouse (100% of the injection in COAp) labelled axons in BA (projection density 0.328).

Allen Mouse Brain Connectivity Atlas, experiment 114249084

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MEA (Medial amygdalar nucleus) MBA:403 projects to TMd (Tuberomammillary nucleus, dorsal part) MBA:1126 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in TMd (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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CEA (Central amygdalar nucleus) MBA:536 projects to STN (Subthalamic nucleus) MBA:470 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in STN (projection density 0.084).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to EPd (Endopiriform nucleus, dorsal part) MBA:952 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277710753, an anterograde tracer injected into BLA of a wild-type mouse (49% of the injection in BLA) labelled axons in EPd (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 277710753

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CEA (Central amygdalar nucleus) MBA:536 projects to RT (Reticular nucleus of the thalamus) MBA:262 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in RT (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

PL (Prelimbic area) MBA:972 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263106036, an anterograde tracer injected into PL of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (46% of the injection in PL) labelled axons in MEA (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 263106036

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in BA (projection density 0.052).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

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CEA (Central amygdalar nucleus) MBA:536 projects to RR (Midbrain reticular nucleus, retrorubral area) MBA:246 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in RR (projection density 0.092).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

PB (Parabrachial nucleus) MBA:867 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 313141786, an anterograde tracer injected into PB of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (71% of the injection in PB) labelled axons in CEA (projection density 0.092).

Allen Mouse Brain Connectivity Atlas, experiment 313141786

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CEA (Central amygdalar nucleus) MBA:536 projects to PP (Peripeduncular nucleus) MBA:1044 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 241279261, an anterograde tracer injected into CEA of a Tac2-IRES2-Cre mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in PP (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 241279261

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CEA (Central amygdalar nucleus) MBA:536 projects to PMd (Dorsal premammillary nucleus) MBA:980 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in PMd (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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PT (Parataenial nucleus) MBA:15 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305449231, an anterograde tracer injected into PT of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (57% of the injection in PT) labelled axons in BLA (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 305449231

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BST (Bed nuclei of the stria terminalis) MBA:351 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 117312486, an anterograde tracer injected into BST of a wild-type mouse (83% of the injection in BST) labelled axons in AAA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 117312486

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ENTl (Entorhinal area, lateral part) MBA:918 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 585756865, an anterograde tracer injected into ENTl of a Ntng2-IRES2-Cre mouse, the tracer Cre-dependent (57% of the injection in ENTl) labelled axons in BMA (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 585756865

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 523705737, an anterograde tracer injected into AHN of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (16% of the injection in AHN) labelled axons in BMA (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 523705737

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in CEA (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to AUDv (Ventral auditory area) MBA:1018 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in AUDv (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

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AOB (Accessory olfactory bulb) MBA:151 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293546902, an anterograde tracer injected into AOB of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (45% of the injection in AOB) labelled axons in MEA (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 293546902

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158258062, an anterograde tracer injected into VMH of a wild-type mouse (20% of the injection in VMH) labelled axons in MEA (projection density 0.131).

Allen Mouse Brain Connectivity Atlas, experiment 158258062

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MEA (Medial amygdalar nucleus) MBA:403 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in IA (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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CEA (Central amygdalar nucleus) MBA:536 projects to PB (Parabrachial nucleus) MBA:867 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120281646, an anterograde tracer injected into CEA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (98% of the injection in CEA) labelled axons in PB (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 120281646

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CEA (Central amygdalar nucleus) MBA:536 projects to IMD (Intermediodorsal nucleus of the thalamus) MBA:59 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in IMD (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to RCH (Retrochiasmatic area) MBA:173 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267813932, an anterograde tracer injected into BMA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (38% of the injection in BMA) labelled axons in RCH (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 267813932

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to MOp (Primary motor area) MBA:985 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in MOp (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to LC (Locus ceruleus) MBA:147 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in LC (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to MEPO (Median preoptic nucleus) MBA:452 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in MEPO (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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MEA (Medial amygdalar nucleus) MBA:403 projects to RL (Rostral linear nucleus raphe) MBA:197 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in RL (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158258062, an anterograde tracer injected into VMH of a wild-type mouse (20% of the injection in VMH) labelled axons in CEA (projection density 0.185).

Allen Mouse Brain Connectivity Atlas, experiment 158258062

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to LM (Lateral mammillary nucleus) MBA:210 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in LM (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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MEA (Medial amygdalar nucleus) MBA:403 projects to FS (Fundus of striatum) MBA:998 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in FS (projection density 0.070).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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CA1 (Field CA1) MBA:382 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286610216, an anterograde tracer injected into CA1 of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (83% of the injection in CA1) labelled axons in COAp (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 286610216

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to EPd (Endopiriform nucleus, dorsal part) MBA:952 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in EPd (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

Made by an adapter reading a database (allen-connectivity@1.3.0).

AHN (Anterior hypothalamic nucleus) MBA:88 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180674463, an anterograde tracer injected into AHN of a wild-type mouse (24% of the injection in AHN) labelled axons in PA (projection density 0.087).

Allen Mouse Brain Connectivity Atlas, experiment 180674463

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AON (Anterior olfactory nucleus) MBA:159 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114755099, an anterograde tracer injected into AON of a wild-type mouse (30% of the injection in AON) labelled axons in CEA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 114755099

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MEA (Medial amygdalar nucleus) MBA:403 projects to RE (Nucleus of reuniens) MBA:181 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in RE (projection density 0.062).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286483411, an anterograde tracer injected into ENTl of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (94% of the injection in ENTl) labelled axons in BLA (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 286483411

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180297139, an anterograde tracer injected into ENTl of a wild-type mouse (93% of the injection in ENTl) labelled axons in LA (projection density 0.080).

Allen Mouse Brain Connectivity Atlas, experiment 180297139

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NDB (Diagonal band nucleus) MBA:596 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158257355, an anterograde tracer injected into NDB of a wild-type mouse (18% of the injection in NDB) labelled axons in BA (projection density 0.063).

Allen Mouse Brain Connectivity Atlas, experiment 158257355

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PIR (Piriform area) MBA:961 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112307046, an anterograde tracer injected into PIR of a wild-type mouse (76% of the injection in PIR) labelled axons in BLA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 112307046

Made by an adapter reading a database (allen-connectivity@1.3.0).