A mesoscale connectome of the mouse brain

PH (Posterior hypothalamic nucleus) MBA:946 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 268208632, an anterograde tracer injected into PH of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (21% of the injection in PH) labelled axons in CEA (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 268208632

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MEA (Medial amygdalar nucleus) MBA:403 projects to LH (Lateral habenula) MBA:186 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in LH (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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NPC (Nucleus of the posterior commissure) MBA:634 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182031296, an anterograde tracer injected into NPC of a Pdzk1ip1-Cre_KD31 mouse, the tracer Cre-dependent (16% of the injection in NPC) labelled axons in BA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 182031296

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SGN (Suprageniculate nucleus) MBA:325 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113165340, an anterograde tracer injected into SGN of a Etv1-CreERT2 mouse, the tracer Cre-dependent (16% of the injection in SGN) labelled axons in BA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 113165340

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MD (Mediodorsal nucleus of thalamus) MBA:362 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272875132, an anterograde tracer injected into MD of a wild-type mouse (36% of the injection in MD) labelled axons in IA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 272875132

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MEA (Medial amygdalar nucleus) MBA:403 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304694870, an anterograde tracer injected into MEA of a Nos1-CreERT2 mouse, the tracer Cre-dependent (100% of the injection in MEA) labelled axons in PA (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 304694870

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PP (Peripeduncular nucleus) MBA:1044 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in PP (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

Made by an adapter reading a database (allen-connectivity@1.3.0).

DR (Dorsal nucleus raphe) MBA:872 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 547510030, an anterograde tracer injected into DR of a Slc17a8-IRES2-Cre mouse, the tracer Cre-dependent (75% of the injection in DR) labelled axons in CEA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 547510030

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SI (Substantia innominata) MBA:342 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305026861, an anterograde tracer injected into SI of a Drd3-Cre_KI196 mouse, the tracer Cre-dependent (78% of the injection in SI) labelled axons in TR (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 305026861

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 287952517, an anterograde tracer injected into ENTl of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (81% of the injection in ENTl) labelled axons in BLA (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 287952517

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PT (Parataenial nucleus) MBA:15 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159432479, an anterograde tracer injected into PT of a Cck-IRES-Cre mouse, the tracer Cre-dependent (30% of the injection in PT) labelled axons in PA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 159432479

Made by an adapter reading a database (allen-connectivity@1.3.0).

VTA (Ventral tegmental area) MBA:749 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 477927130, an anterograde tracer injected into VTA of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (23% of the injection in VTA) labelled axons in PA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 477927130

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to RH (Rhomboid nucleus) MBA:189 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in RH (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

Made by an adapter reading a database (allen-connectivity@1.3.0).

LHA (Lateral hypothalamic area) MBA:194 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127470271, an anterograde tracer injected into LHA of a wild-type mouse (31% of the injection in LHA) labelled axons in MEA (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 127470271

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CEA (Central amygdalar nucleus) MBA:536 projects to LIN (Linear nucleus of the medulla) MBA:203 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in LIN (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

Made by an adapter reading a database (allen-connectivity@1.3.0).

AHN (Anterior hypothalamic nucleus) MBA:88 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267928135, an anterograde tracer injected into AHN of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (28% of the injection in AHN) labelled axons in IA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 267928135

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293009265, an anterograde tracer injected into ENTl of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (82% of the injection in ENTl) labelled axons in TR (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 293009265

Made by an adapter reading a database (allen-connectivity@1.3.0).

PB (Parabrachial nucleus) MBA:867 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 511971714, an anterograde tracer injected into PB of a Th-Cre_FI172 mouse, the tracer Cre-dependent (46% of the injection in PB) labelled axons in CEA (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 511971714

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MS (Medial septal nucleus) MBA:564 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 100141597, an anterograde tracer injected into MS of a wild-type mouse (58% of the injection in MS) labelled axons in COAp (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 100141597

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LHA (Lateral hypothalamic area) MBA:194 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113369603, an anterograde tracer injected into LHA of a wild-type mouse (23% of the injection in LHA) labelled axons in IA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 113369603

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CP (Caudoputamen) MBA:672 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114399934, an anterograde tracer injected into CP of a wild-type mouse (96% of the injection in CP) labelled axons in BLA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 114399934

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MEA (Medial amygdalar nucleus) MBA:403 projects to BST (Bed nuclei of the stria terminalis) MBA:351 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in BST (projection density 0.143).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

Made by an adapter reading a database (allen-connectivity@1.3.0).

AIv (Agranular insular area, ventral part) MBA:119 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 166153483, an anterograde tracer injected into AIv of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (57% of the injection in AIv) labelled axons in AAA (projection density 0.108).

Allen Mouse Brain Connectivity Atlas, experiment 166153483

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to MT (Medial terminal nucleus of the accessory optic tract) MBA:58 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in MT (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

SI (Substantia innominata) MBA:342 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159650350, an anterograde tracer injected into SI of a wild-type mouse (38% of the injection in SI) labelled axons in COAp (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 159650350

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in COAp (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114249084, an anterograde tracer injected into COAp of a wild-type mouse (100% of the injection in COAp) labelled axons in COAa (projection density 0.097).

Allen Mouse Brain Connectivity Atlas, experiment 114249084

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DR (Dorsal nucleus raphe) MBA:872 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168300027, an anterograde tracer injected into DR of a Slc6a4-Cre_ET33 mouse, the tracer Cre-dependent (27% of the injection in DR) labelled axons in BLA (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 168300027

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RE (Nucleus of reuniens) MBA:181 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265286700, an anterograde tracer injected into RE of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (49% of the injection in RE) labelled axons in PA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 265286700

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146985623, an anterograde tracer injected into MEA of a wild-type mouse (94% of the injection in MEA) labelled axons in MPO (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 146985623

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MPO (Medial preoptic area) MBA:523 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158738180, an anterograde tracer injected into MPO of a wild-type mouse (27% of the injection in MPO) labelled axons in AAA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 158738180

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to TU (Tuberal nucleus) MBA:614 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in TU (projection density 0.301).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127396051, an anterograde tracer injected into PIL of a wild-type mouse (32% of the injection in PIL) labelled axons in LA (projection density 0.103).

Allen Mouse Brain Connectivity Atlas, experiment 127396051

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in MPO (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

ILA (Infralimbic area) MBA:44 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286313491, an anterograde tracer injected into ILA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (52% of the injection in ILA) labelled axons in MEA (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 286313491

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to RH (Rhomboid nucleus) MBA:189 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in RH (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in BA (projection density 0.073).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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CEA (Central amygdalar nucleus) MBA:536 projects to EW (Edinger-Westphal nucleus) MBA:975 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in EW (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to SUM (Supramammillary nucleus) MBA:525 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in SUM (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to LPO (Lateral preoptic area) MBA:226 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267813932, an anterograde tracer injected into BMA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (38% of the injection in BMA) labelled axons in LPO (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 267813932

Made by an adapter reading a database (allen-connectivity@1.3.0).

TU (Tuberal nucleus) MBA:614 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264320076, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (15% of the injection in TU) labelled axons in COAa (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 264320076

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IPN (Interpeduncular nucleus) MBA:100 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267538735, an anterograde tracer injected into IPN of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (20% of the injection in IPN) labelled axons in LA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 267538735

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CEA (Central amygdalar nucleus) MBA:536 projects to LHA (Lateral hypothalamic area) MBA:194 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181889764, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (55% of the injection in CEA) labelled axons in LHA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 181889764

Made by an adapter reading a database (allen-connectivity@1.3.0).

AIv (Agranular insular area, ventral part) MBA:119 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 513773998, an anterograde tracer injected into AIv of a Ntng2-IRES2-Cre mouse, the tracer Cre-dependent (43% of the injection in AIv) labelled axons in BA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 513773998

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PMv (Ventral premammillary nucleus) MBA:1004 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146985623, an anterograde tracer injected into MEA of a wild-type mouse (94% of the injection in MEA) labelled axons in PMv (projection density 0.061).

Allen Mouse Brain Connectivity Atlas, experiment 146985623

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263974698, an anterograde tracer injected into ENTl of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (96% of the injection in ENTl) labelled axons in TR (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 263974698

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in LA (projection density 0.143).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to AON (Anterior olfactory nucleus) MBA:159 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114249084, an anterograde tracer injected into COAp of a wild-type mouse (100% of the injection in COAp) labelled axons in AON (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 114249084

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PSTN (Parasubthalamic nucleus) MBA:364 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in PSTN (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304694870, an anterograde tracer injected into MEA of a Nos1-CreERT2 mouse, the tracer Cre-dependent (100% of the injection in MEA) labelled axons in LA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 304694870

Made by an adapter reading a database (allen-connectivity@1.3.0).