A mesoscale connectome of the mouse brain

MEA (Medial amygdalar nucleus) MBA:403 projects to BST (Bed nuclei of the stria terminalis) MBA:351 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in BST (projection density 0.090).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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IPN (Interpeduncular nucleus) MBA:100 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267538735, an anterograde tracer injected into IPN of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (20% of the injection in IPN) labelled axons in MEA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 267538735

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MEA (Medial amygdalar nucleus) MBA:403 projects to ARH (Arcuate hypothalamic nucleus) MBA:223 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in ARH (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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MEA (Medial amygdalar nucleus) MBA:403 projects to PD (Posterodorsal preoptic nucleus) MBA:914 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in PD (projection density 0.087).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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CEA (Central amygdalar nucleus) MBA:536 projects to RL (Rostral linear nucleus raphe) MBA:197 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in RL (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to DMX (Dorsal motor nucleus of the vagus nerve) MBA:839 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in DMX (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

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AId (Agranular insular area, dorsal part) MBA:104 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184168899, an anterograde tracer injected into AId of a Grp-Cre_KH288 mouse, the tracer Cre-dependent (73% of the injection in AId) labelled axons in BLA (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 184168899

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ENTl (Entorhinal area, lateral part) MBA:918 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114472145, an anterograde tracer injected into ENTl of a wild-type mouse (94% of the injection in ENTl) labelled axons in LA (projection density 0.297).

Allen Mouse Brain Connectivity Atlas, experiment 114472145

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 302740314, an anterograde tracer injected into COAp of a Gad2-IRES-Cre mouse, the tracer Cre-dependent (48% of the injection in COAp) labelled axons in TR (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 302740314

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to CM (Central medial nucleus of the thalamus) MBA:599 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in CM (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SBPV (Subparaventricular zone) MBA:347 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in SBPV (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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PIR (Piriform area) MBA:961 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286728190, an anterograde tracer injected into PIR of a Cux2-CreERT2 mouse, the tracer Cre-dependent (55% of the injection in PIR) labelled axons in MEA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 286728190

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TT (Taenia tecta) MBA:589 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 133286030, an anterograde tracer injected into TT of a wild-type mouse (43% of the injection in TT) labelled axons in BA (projection density 0.071).

Allen Mouse Brain Connectivity Atlas, experiment 133286030

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RE (Nucleus of reuniens) MBA:181 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 174957972, an anterograde tracer injected into RE of a wild-type mouse (25% of the injection in RE) labelled axons in BMA (projection density 0.170).

Allen Mouse Brain Connectivity Atlas, experiment 174957972

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MEA (Medial amygdalar nucleus) MBA:403 projects to NDB (Diagonal band nucleus) MBA:596 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in NDB (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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CA1 (Field CA1) MBA:382 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286610216, an anterograde tracer injected into CA1 of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (83% of the injection in CA1) labelled axons in IA (projection density 0.069).

Allen Mouse Brain Connectivity Atlas, experiment 286610216

Made by an adapter reading a database (allen-connectivity@1.3.0).

CM (Central medial nucleus of the thalamus) MBA:599 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158841171, an anterograde tracer injected into CM of a wild-type mouse (17% of the injection in CM) labelled axons in CEA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 158841171

Made by an adapter reading a database (allen-connectivity@1.3.0).

AIp (Agranular insular area, posterior part) MBA:111 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286775476, an anterograde tracer injected into AIp of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (43% of the injection in AIp) labelled axons in CEA (projection density 0.062).

Allen Mouse Brain Connectivity Atlas, experiment 286775476

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183225830, an anterograde tracer injected into PVT of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (54% of the injection in PVT) labelled axons in MEA (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 183225830

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AON (Anterior olfactory nucleus) MBA:159 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170949055, an anterograde tracer injected into AON of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (61% of the injection in AON) labelled axons in IA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 170949055

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to RT (Reticular nucleus of the thalamus) MBA:262 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in RT (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PVH (Paraventricular hypothalamic nucleus) MBA:38 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in PVH (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

Made by an adapter reading a database (allen-connectivity@1.3.0).

RE (Nucleus of reuniens) MBA:181 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184158290, an anterograde tracer injected into RE of a Calb2-IRES-Cre mouse, the tracer Cre-dependent (47% of the injection in RE) labelled axons in BMA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 184158290

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SSp-ll (Primary somatosensory area, lower limb) MBA:337 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in SSp-ll (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to FS (Fundus of striatum) MBA:998 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in FS (projection density 0.079).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PSTN (Parasubthalamic nucleus) MBA:364 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267152406, an anterograde tracer injected into CEA of a Crh-IRES-Cre_ZJH mouse, the tracer Cre-dependent (67% of the injection in CEA) labelled axons in PSTN (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 267152406

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MEA (Medial amygdalar nucleus) MBA:403 projects to NPC (Nucleus of the posterior commissure) MBA:634 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in NPC (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 298050269, an anterograde tracer injected into PVT of a Lypd6-Cre_KL156 mouse, the tracer Cre-dependent (45% of the injection in PVT) labelled axons in CEA (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 298050269

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ARH (Arcuate hypothalamic nucleus) MBA:223 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263369222, an anterograde tracer injected into ARH of a Pomc-Cre_BL mouse, the tracer Cre-dependent (64% of the injection in ARH) labelled axons in MEA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 263369222

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVT (Paraventricular nucleus of the thalamus) MBA:149 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PVT (projection density 0.099).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PT (Parataenial nucleus) MBA:15 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in PT (projection density 0.054).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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NDB (Diagonal band nucleus) MBA:596 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158257355, an anterograde tracer injected into NDB of a wild-type mouse (18% of the injection in NDB) labelled axons in PA (projection density 0.182).

Allen Mouse Brain Connectivity Atlas, experiment 158257355

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PST (Preparasubthalamic nucleus) MBA:356 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in PST (projection density 0.188).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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LHA (Lateral hypothalamic area) MBA:194 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158373181, an anterograde tracer injected into LHA of a wild-type mouse (35% of the injection in LHA) labelled axons in BLA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 158373181

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MS (Medial septal nucleus) MBA:564 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265944939, an anterograde tracer injected into MS of a Ntrk1-IRES-Cre mouse, the tracer Cre-dependent (60% of the injection in MS) labelled axons in PA (projection density 0.104).

Allen Mouse Brain Connectivity Atlas, experiment 265944939

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DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 266174751, an anterograde tracer injected into DMH of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (11% of the injection in DMH) labelled axons in CEA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 266174751

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MEA (Medial amygdalar nucleus) MBA:403 projects to IV (Trochlear nucleus) MBA:115 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in IV (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277854208, an anterograde tracer injected into VMH of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (39% of the injection in VMH) labelled axons in BLA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 277854208

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MEA (Medial amygdalar nucleus) MBA:403 projects to ASO (Accessory supraoptic group) MBA:332 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in ASO (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

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ZI (Zona incerta) MBA:797 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175018829, an anterograde tracer injected into ZI of a wild-type mouse (29% of the injection in ZI) labelled axons in BA (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 175018829

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CEA (Central amygdalar nucleus) MBA:536 projects to DR (Dorsal nucleus raphe) MBA:872 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in DR (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to LPO (Lateral preoptic area) MBA:226 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in LPO (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to DR (Dorsal nucleus raphe) MBA:872 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in DR (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in BLA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVH (Paraventricular hypothalamic nucleus) MBA:38 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in PVH (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PT (Parataenial nucleus) MBA:15 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in PT (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 558580065, an anterograde tracer injected into ENTm of a wild-type mouse (60% of the injection in ENTm) labelled axons in COAp (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 558580065

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CEA (Central amygdalar nucleus) MBA:536 projects to ADP (Anterodorsal preoptic nucleus) MBA:72 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in ADP (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to MA (Magnocellular nucleus) MBA:298 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305321177, an anterograde tracer injected into BLA of a Slc32a1-IRES-Cre mouse, the tracer Cre-dependent (37% of the injection in BLA) labelled axons in MA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 305321177

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in SO (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

Made by an adapter reading a database (allen-connectivity@1.3.0).