A mesoscale connectome of the mouse brain

ENTl (Entorhinal area, lateral part) MBA:918 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182794184, an anterograde tracer injected into ENTl of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (93% of the injection in ENTl) labelled axons in CEA (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 182794184

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AId (Agranular insular area, dorsal part) MBA:104 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112596790, an anterograde tracer injected into AId of a wild-type mouse (83% of the injection in AId) labelled axons in CEA (projection density 0.145).

Allen Mouse Brain Connectivity Atlas, experiment 112596790

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BST (Bed nuclei of the stria terminalis) MBA:351 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175739085, an anterograde tracer injected into BST of a Slc6a3-Cre mouse, the tracer Cre-dependent (95% of the injection in BST) labelled axons in MEA (projection density 0.071).

Allen Mouse Brain Connectivity Atlas, experiment 175739085

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PIR (Piriform area) MBA:961 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184259031, an anterograde tracer injected into PIR of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (98% of the injection in PIR) labelled axons in MEA (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 184259031

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to AVP (Anteroventral preoptic nucleus) MBA:263 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in AVP (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

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MEA (Medial amygdalar nucleus) MBA:403 projects to SUM (Supramammillary nucleus) MBA:525 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in SUM (projection density 0.054).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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MOs (Secondary motor area) MBA:993 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157710335, an anterograde tracer injected into MOs of a wild-type mouse (54% of the injection in MOs) labelled axons in BLA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 157710335

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AIv (Agranular insular area, ventral part) MBA:119 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 513773998, an anterograde tracer injected into AIv of a Ntng2-IRES2-Cre mouse, the tracer Cre-dependent (43% of the injection in AIv) labelled axons in IA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 513773998

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MEA (Medial amygdalar nucleus) MBA:403 projects to ARH (Arcuate hypothalamic nucleus) MBA:223 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in ARH (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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MEA (Medial amygdalar nucleus) MBA:403 projects to TMv (Tuberomammillary nucleus, ventral part) MBA:1 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146985623, an anterograde tracer injected into MEA of a wild-type mouse (94% of the injection in MEA) labelled axons in TMv (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 146985623

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PT (Parataenial nucleus) MBA:15 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 123662982, an anterograde tracer injected into PT of a wild-type mouse (28% of the injection in PT) labelled axons in IA (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 123662982

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VISp (Primary visual area) MBA:385 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 309004492, an anterograde tracer injected into VISp of a wild-type mouse (53% of the injection in VISp) labelled axons in LA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 309004492

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MEA (Medial amygdalar nucleus) MBA:403 projects to SSp-un (Primary somatosensory area, unassigned) MBA:182305689 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293469501, an anterograde tracer injected into MEA of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (77% of the injection in MEA) labelled axons in SSp-un (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 293469501

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MEA (Medial amygdalar nucleus) MBA:403 projects to PMv (Ventral premammillary nucleus) MBA:1004 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in PMv (projection density 0.102).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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MEA (Medial amygdalar nucleus) MBA:403 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 549361039, an anterograde tracer injected into MEA of a Oxtr-T2A-Cre mouse, the tracer Cre-dependent (61% of the injection in MEA) labelled axons in BMA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 549361039

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AAA (Anterior amygdalar area) MBA:23 projects to LPO (Lateral preoptic area) MBA:226 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in LPO (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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NDB (Diagonal band nucleus) MBA:596 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167200755, an anterograde tracer injected into NDB of a Chat-IRES-Cre-neo mouse, the tracer Cre-dependent (64% of the injection in NDB) labelled axons in COAa (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 167200755

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MEA (Medial amygdalar nucleus) MBA:403 projects to MPN (Medial preoptic nucleus) MBA:515 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in MPN (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to VLPO (Ventrolateral preoptic nucleus) MBA:689 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in VLPO (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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PA (Posterior amygdalar nucleus) MBA:780 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304721447, an anterograde tracer injected into PA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (69% of the injection in PA) labelled axons in SO (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 304721447

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVH (Paraventricular hypothalamic nucleus) MBA:38 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in PVH (projection density 0.066).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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PA (Posterior amygdalar nucleus) MBA:780 projects to EPd (Endopiriform nucleus, dorsal part) MBA:952 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304721447, an anterograde tracer injected into PA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (69% of the injection in PA) labelled axons in EPd (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 304721447

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MEA (Medial amygdalar nucleus) MBA:403 projects to SBPV (Subparaventricular zone) MBA:347 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in SBPV (projection density 0.068).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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CEA (Central amygdalar nucleus) MBA:536 projects to MA3 (Medial accesory oculomotor nucleus) MBA:549009211 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in MA3 (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in PA (projection density 0.055).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

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MEA (Medial amygdalar nucleus) MBA:403 projects to HATA (Hippocampo-amygdalar transition area) MBA:589508447 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in HATA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

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MEA (Medial amygdalar nucleus) MBA:403 projects to SMT (Submedial nucleus of the thalamus) MBA:366 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in SMT (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184157585, an anterograde tracer injected into PVT of a Calb2-IRES-Cre mouse, the tracer Cre-dependent (78% of the injection in PVT) labelled axons in IA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 184157585

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to FS (Fundus of striatum) MBA:998 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in FS (projection density 0.065).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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MEA (Medial amygdalar nucleus) MBA:403 projects to AHN (Anterior hypothalamic nucleus) MBA:88 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in AHN (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

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LSv (Lateral septal nucleus, ventral part) MBA:266 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167654731, an anterograde tracer injected into LSv of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (21% of the injection in LSv) labelled axons in BA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 167654731

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183225830, an anterograde tracer injected into PVT of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (54% of the injection in PVT) labelled axons in CEA (projection density 0.145).

Allen Mouse Brain Connectivity Atlas, experiment 183225830

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MEA (Medial amygdalar nucleus) MBA:403 projects to VPMpc (Ventral posteromedial nucleus of the thalamus, parvicellular part) MBA:741 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in VPMpc (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to TRN (Tegmental reticular nucleus) MBA:574 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in TRN (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286303000, an anterograde tracer injected into MEA of a Slc6a3-Cre mouse, the tracer Cre-dependent (97% of the injection in MEA) labelled axons in BA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 286303000

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to MA3 (Medial accesory oculomotor nucleus) MBA:549009211 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in MA3 (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVH (Paraventricular hypothalamic nucleus) MBA:38 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in PVH (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

Made by an adapter reading a database (allen-connectivity@1.3.0).

AOB (Accessory olfactory bulb) MBA:151 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293546902, an anterograde tracer injected into AOB of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (45% of the injection in AOB) labelled axons in COAa (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 293546902

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TR (Postpiriform transition area) MBA:566 projects to SI (Substantia innominata) MBA:342 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126653015, an anterograde tracer injected into TR of a wild-type mouse (99% of the injection in TR) labelled axons in SI (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 126653015

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LHA (Lateral hypothalamic area) MBA:194 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127470271, an anterograde tracer injected into LHA of a wild-type mouse (31% of the injection in LHA) labelled axons in AAA (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 127470271

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MEA (Medial amygdalar nucleus) MBA:403 projects to PP (Peripeduncular nucleus) MBA:1044 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PP (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

PB (Parabrachial nucleus) MBA:867 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183284388, an anterograde tracer injected into PB of a Calb2-IRES-Cre mouse, the tracer Cre-dependent (91% of the injection in PB) labelled axons in IA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 183284388

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to CLI (Central linear nucleus raphe) MBA:591 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in CLI (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PD (Posterodorsal preoptic nucleus) MBA:914 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267813932, an anterograde tracer injected into BMA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (38% of the injection in BMA) labelled axons in PD (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 267813932

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ENTl (Entorhinal area, lateral part) MBA:918 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182226133, an anterograde tracer injected into ENTl of a Otof-Cre mouse, the tracer Cre-dependent (99% of the injection in ENTl) labelled axons in LA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 182226133

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to RCH (Retrochiasmatic area) MBA:173 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in RCH (projection density 0.059).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PAA (Piriform-amygdalar area) MBA:788 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in PAA (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

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PT (Parataenial nucleus) MBA:15 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 123662982, an anterograde tracer injected into PT of a wild-type mouse (28% of the injection in PT) labelled axons in COAa (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 123662982

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to P5 (Peritrigeminal zone) MBA:549009215 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in P5 (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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V (Motor nucleus of trigeminal) MBA:621 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 166052101, an anterograde tracer injected into V of a Chat-IRES-Cre-neo mouse, the tracer Cre-dependent (86% of the injection in V) labelled axons in CEA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 166052101

Made by an adapter reading a database (allen-connectivity@1.3.0).