A mesoscale connectome of the mouse brain

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in AAA (projection density 0.173).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

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MEA (Medial amygdalar nucleus) MBA:403 projects to DR (Dorsal nucleus raphe) MBA:872 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in DR (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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PMv (Ventral premammillary nucleus) MBA:1004 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 299654968, an anterograde tracer injected into PMv of a Tac1-IRES2-Cre mouse, the tracer Cre-dependent (33% of the injection in PMv) labelled axons in CEA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 299654968

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to CLA (Claustrum) MBA:583 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in CLA (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to EPv (Endopiriform nucleus, ventral part) MBA:966 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in EPv (projection density 0.060).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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IF (Interfascicular nucleus raphe) MBA:12 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301732962, an anterograde tracer injected into IF of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (21% of the injection in IF) labelled axons in AAA (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 301732962

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CEA (Central amygdalar nucleus) MBA:536 projects to ISN (Inferior salivatory nucleus) MBA:106 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in ISN (projection density 0.062).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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ENTl (Entorhinal area, lateral part) MBA:918 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 232311959, an anterograde tracer injected into ENTl of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (76% of the injection in ENTl) labelled axons in TR (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 232311959

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to TMv (Tuberomammillary nucleus, ventral part) MBA:1 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in TMv (projection density 0.102).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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CEA (Central amygdalar nucleus) MBA:536 projects to IRN (Intermediate reticular nucleus) MBA:136 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in IRN (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PeF (Perifornical nucleus) MBA:576073704 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in PeF (projection density 0.072).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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MEA (Medial amygdalar nucleus) MBA:403 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305124396, an anterograde tracer injected into MEA of a Gad2-IRES-Cre mouse, the tracer Cre-dependent (65% of the injection in MEA) labelled axons in AAA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 305124396

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SI (Substantia innominata) MBA:342 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125436508, an anterograde tracer injected into SI of a wild-type mouse (40% of the injection in SI) labelled axons in AAA (projection density 0.067).

Allen Mouse Brain Connectivity Atlas, experiment 125436508

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MEA (Medial amygdalar nucleus) MBA:403 projects to P5 (Peritrigeminal zone) MBA:549009215 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in P5 (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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MRN (Midbrain reticular nucleus) MBA:128 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 174583187, an anterograde tracer injected into MRN of a wild-type mouse (19% of the injection in MRN) labelled axons in BMA (projection density 0.090).

Allen Mouse Brain Connectivity Atlas, experiment 174583187

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MD (Mediodorsal nucleus of thalamus) MBA:362 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175739791, an anterograde tracer injected into MD of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (39% of the injection in MD) labelled axons in COAa (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 175739791

Made by an adapter reading a database (allen-connectivity@1.3.0).

BST (Bed nuclei of the stria terminalis) MBA:351 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 147049515, an anterograde tracer injected into BST of a wild-type mouse (57% of the injection in BST) labelled axons in MEA (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 147049515

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to NLOT (Nucleus of the lateral olfactory tract) MBA:619 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in NLOT (projection density 0.126).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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NLOT (Nucleus of the lateral olfactory tract) MBA:619 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159151138, an anterograde tracer injected into NLOT of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (67% of the injection in NLOT) labelled axons in BLA (projection density 0.096).

Allen Mouse Brain Connectivity Atlas, experiment 159151138

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SUM (Supramammillary nucleus) MBA:525 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in SUM (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286728190, an anterograde tracer injected into PIR of a Cux2-CreERT2 mouse, the tracer Cre-dependent (55% of the injection in PIR) labelled axons in BMA (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 286728190

Made by an adapter reading a database (allen-connectivity@1.3.0).

CA1 (Field CA1) MBA:382 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182226839, an anterograde tracer injected into CA1 of a Vipr2-Cre_KE2 mouse, the tracer Cre-dependent (44% of the injection in CA1) labelled axons in IA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 182226839

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MEA (Medial amygdalar nucleus) MBA:403 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in BA (projection density 0.351).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PVH (Paraventricular hypothalamic nucleus) MBA:38 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in PVH (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PARN (Parvicellular reticular nucleus) MBA:852 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in PARN (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

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ENTl (Entorhinal area, lateral part) MBA:918 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182794184, an anterograde tracer injected into ENTl of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (93% of the injection in ENTl) labelled axons in COAp (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 182794184

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VISpor (Postrhinal area) MBA:312782628 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127089669, an anterograde tracer injected into VISpor of a wild-type mouse (68% of the injection in VISpor) labelled axons in BLA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 127089669

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PH (Posterior hypothalamic nucleus) MBA:946 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 268204599, an anterograde tracer injected into PH of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (56% of the injection in PH) labelled axons in MEA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 268204599

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TR (Postpiriform transition area) MBA:566 projects to AId (Agranular insular area, dorsal part) MBA:104 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126653015, an anterograde tracer injected into TR of a wild-type mouse (99% of the injection in TR) labelled axons in AId (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 126653015

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ENTl (Entorhinal area, lateral part) MBA:918 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 642967852, an anterograde tracer injected into ENTl of a wild-type mouse (98% of the injection in ENTl) labelled axons in IA (projection density 0.063).

Allen Mouse Brain Connectivity Atlas, experiment 642967852

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267540168, an anterograde tracer injected into VMH of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (56% of the injection in VMH) labelled axons in COAa (projection density 0.055).

Allen Mouse Brain Connectivity Atlas, experiment 267540168

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to NDB (Diagonal band nucleus) MBA:596 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in NDB (projection density 0.055).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

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ENTl (Entorhinal area, lateral part) MBA:918 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183225124, an anterograde tracer injected into ENTl of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (80% of the injection in ENTl) labelled axons in BA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 183225124

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MEA (Medial amygdalar nucleus) MBA:403 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in LA (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to ACB (Nucleus accumbens) MBA:56 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in ACB (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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CEA (Central amygdalar nucleus) MBA:536 projects to MDRN (Medullary reticular nucleus) MBA:395 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in MDRN (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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VISp (Primary visual area) MBA:385 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114008926, an anterograde tracer injected into VISp of a wild-type mouse (31% of the injection in VISp) labelled axons in MEA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 114008926

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CA1 (Field CA1) MBA:382 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286610923, an anterograde tracer injected into CA1 of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (85% of the injection in CA1) labelled axons in TR (projection density 0.102).

Allen Mouse Brain Connectivity Atlas, experiment 286610923

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MEA (Medial amygdalar nucleus) MBA:403 projects to IV (Trochlear nucleus) MBA:115 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in IV (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to STN (Subthalamic nucleus) MBA:470 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305321177, an anterograde tracer injected into BLA of a Slc32a1-IRES-Cre mouse, the tracer Cre-dependent (37% of the injection in BLA) labelled axons in STN (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 305321177

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MEA (Medial amygdalar nucleus) MBA:403 projects to SPFm (Subparafascicular nucleus, magnocellular part) MBA:414 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in SPFm (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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CEA (Central amygdalar nucleus) MBA:536 projects to MOp (Primary motor area) MBA:985 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in MOp (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to SNc (Substantia nigra, compact part) MBA:374 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in SNc (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to IRN (Intermediate reticular nucleus) MBA:136 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in IRN (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to MPN (Medial preoptic nucleus) MBA:515 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in MPN (projection density 0.067).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to LPO (Lateral preoptic area) MBA:226 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 241279261, an anterograde tracer injected into CEA of a Tac2-IRES2-Cre mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in LPO (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 241279261

Made by an adapter reading a database (allen-connectivity@1.3.0).

PB (Parabrachial nucleus) MBA:867 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 313141786, an anterograde tracer injected into PB of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (71% of the injection in PB) labelled axons in TR (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 313141786

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in BLA (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PST (Preparasubthalamic nucleus) MBA:356 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PST (projection density 0.112).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263974698, an anterograde tracer injected into ENTl of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (96% of the injection in ENTl) labelled axons in COAa (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 263974698

Made by an adapter reading a database (allen-connectivity@1.3.0).