A mesoscale connectome of the mouse brain

CEA (Central amygdalar nucleus) MBA:536 projects to TMd (Tuberomammillary nucleus, dorsal part) MBA:1126 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in TMd (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to LSc (Lateral septal nucleus, caudal (caudodorsal) part) MBA:250 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in LSc (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 171485060, an anterograde tracer injected into PIR of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (100% of the injection in PIR) labelled axons in BA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 171485060

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to CLI (Central linear nucleus raphe) MBA:591 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in CLI (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to SCH (Suprachiasmatic nucleus) MBA:286 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in SCH (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

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VISC (Visceral area) MBA:677 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 174361746, an anterograde tracer injected into VISC of a wild-type mouse (49% of the injection in VISC) labelled axons in BLA (projection density 0.120).

Allen Mouse Brain Connectivity Atlas, experiment 174361746

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MEA (Medial amygdalar nucleus) MBA:403 projects to SSp-ll (Primary somatosensory area, lower limb) MBA:337 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in SSp-ll (projection density 0.057).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to AVPV (Anteroventral periventricular nucleus) MBA:272 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in AVPV (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to LIN (Linear nucleus of the medulla) MBA:203 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in LIN (projection density 0.055).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

AHN (Anterior hypothalamic nucleus) MBA:88 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182842391, an anterograde tracer injected into AHN of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (36% of the injection in AHN) labelled axons in AAA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 182842391

Made by an adapter reading a database (allen-connectivity@1.3.0).

NLOT (Nucleus of the lateral olfactory tract) MBA:619 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 187269162, an anterograde tracer injected into NLOT of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (32% of the injection in NLOT) labelled axons in BLA (projection density 0.099).

Allen Mouse Brain Connectivity Atlas, experiment 187269162

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to ORBl (Orbital area, lateral part) MBA:723 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in ORBl (projection density 0.086).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113226232, an anterograde tracer injected into ENTm of a wild-type mouse (90% of the injection in ENTm) labelled axons in IA (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 113226232

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to LDT (Laterodorsal tegmental nucleus) MBA:162 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in LDT (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to I5 (Intertrigeminal nucleus) MBA:549009227 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in I5 (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

IPN (Interpeduncular nucleus) MBA:100 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267538735, an anterograde tracer injected into IPN of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (20% of the injection in IPN) labelled axons in TR (projection density 0.080).

Allen Mouse Brain Connectivity Atlas, experiment 267538735

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to PS (Parastrial nucleus) MBA:1109 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305321177, an anterograde tracer injected into BLA of a Slc32a1-IRES-Cre mouse, the tracer Cre-dependent (37% of the injection in BLA) labelled axons in PS (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 305321177

Made by an adapter reading a database (allen-connectivity@1.3.0).

LGv (Ventral part of the lateral geniculate complex) MBA:178 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267538006, an anterograde tracer injected into LGv of a Slc32a1-IRES-Cre mouse, the tracer Cre-dependent (43% of the injection in LGv) labelled axons in BA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 267538006

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to MPN (Medial preoptic nucleus) MBA:515 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in MPN (projection density 0.075).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to I5 (Intertrigeminal nucleus) MBA:549009227 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in I5 (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

Made by an adapter reading a database (allen-connectivity@1.3.0).

PB (Parabrachial nucleus) MBA:867 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 511971714, an anterograde tracer injected into PB of a Th-Cre_FI172 mouse, the tracer Cre-dependent (46% of the injection in PB) labelled axons in MEA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 511971714

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127139568, an anterograde tracer injected into ENTm of a wild-type mouse (56% of the injection in ENTm) labelled axons in IA (projection density 0.067).

Allen Mouse Brain Connectivity Atlas, experiment 127139568

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PD (Posterodorsal preoptic nucleus) MBA:914 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in PD (projection density 0.067).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to EPv (Endopiriform nucleus, ventral part) MBA:966 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in EPv (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PMd (Dorsal premammillary nucleus) MBA:980 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in PMd (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 299857096, an anterograde tracer injected into ENTl of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (90% of the injection in ENTl) labelled axons in BLA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 299857096

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264319363, an anterograde tracer injected into VMH of a Esr1-2A-Cre mouse, the tracer Cre-dependent (29% of the injection in VMH) labelled axons in BA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 264319363

Made by an adapter reading a database (allen-connectivity@1.3.0).

AAA (Anterior amygdalar area) MBA:23 projects to PH (Posterior hypothalamic nucleus) MBA:946 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in PH (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to VTA (Ventral tegmental area) MBA:749 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in VTA (projection density 0.071).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

VTA (Ventral tegmental area) MBA:749 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165975096, an anterograde tracer injected into VTA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (17% of the injection in VTA) labelled axons in PA (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 165975096

Made by an adapter reading a database (allen-connectivity@1.3.0).

ORBl (Orbital area, lateral part) MBA:723 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180709230, an anterograde tracer injected into ORBl of a wild-type mouse (34% of the injection in ORBl) labelled axons in BA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 180709230

Made by an adapter reading a database (allen-connectivity@1.3.0).

AON (Anterior olfactory nucleus) MBA:159 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 121509711, an anterograde tracer injected into AON of a wild-type mouse (83% of the injection in AON) labelled axons in BA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 121509711

Made by an adapter reading a database (allen-connectivity@1.3.0).

EPd (Endopiriform nucleus, dorsal part) MBA:952 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 308549214, an anterograde tracer injected into EPd of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (54% of the injection in EPd) labelled axons in COAp (projection density 0.054).

Allen Mouse Brain Connectivity Atlas, experiment 308549214

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in TR (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVH (Paraventricular hypothalamic nucleus) MBA:38 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146985623, an anterograde tracer injected into MEA of a wild-type mouse (94% of the injection in MEA) labelled axons in PVH (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 146985623

Made by an adapter reading a database (allen-connectivity@1.3.0).

MPO (Medial preoptic area) MBA:523 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113554719, an anterograde tracer injected into MPO of a wild-type mouse (43% of the injection in MPO) labelled axons in CEA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 113554719

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SPFp (Subparafascicular nucleus, parvicellular part) MBA:422 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in SPFp (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

DR (Dorsal nucleus raphe) MBA:872 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168300027, an anterograde tracer injected into DR of a Slc6a4-Cre_ET33 mouse, the tracer Cre-dependent (27% of the injection in DR) labelled axons in AAA (projection density 0.060).

Allen Mouse Brain Connectivity Atlas, experiment 168300027

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SPVO (Spinal nucleus of the trigeminal, oral part) MBA:445 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in SPVO (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PoT (Posterior triangular thalamic nucleus) MBA:563807435 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in PoT (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 552759734, an anterograde tracer injected into VMH of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (35% of the injection in VMH) labelled axons in MEA (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 552759734

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to MPN (Medial preoptic nucleus) MBA:515 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in MPN (projection density 0.295).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

Made by an adapter reading a database (allen-connectivity@1.3.0).

AId (Agranular insular area, dorsal part) MBA:104 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 299783689, an anterograde tracer injected into AId of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (45% of the injection in AId) labelled axons in TR (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 299783689

Made by an adapter reading a database (allen-connectivity@1.3.0).

AAA (Anterior amygdalar area) MBA:23 projects to PT (Parataenial nucleus) MBA:15 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in PT (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

AHN (Anterior hypothalamic nucleus) MBA:88 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182842391, an anterograde tracer injected into AHN of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (36% of the injection in AHN) labelled axons in IA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 182842391

Made by an adapter reading a database (allen-connectivity@1.3.0).

ACB (Nucleus accumbens) MBA:56 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146470726, an anterograde tracer injected into ACB of a wild-type mouse (19% of the injection in ACB) labelled axons in BMA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 146470726

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to MPN (Medial preoptic nucleus) MBA:515 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in MPN (projection density 0.060).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

PF (Parafascicular nucleus) MBA:930 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267959197, an anterograde tracer injected into PF of a Vipr2-Cre_KE2 mouse, the tracer Cre-dependent (18% of the injection in PF) labelled axons in BLA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 267959197

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112672974, an anterograde tracer injected into ENTm of a wild-type mouse (84% of the injection in ENTm) labelled axons in PA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 112672974

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 142654100, an anterograde tracer injected into ENTl of a wild-type mouse (91% of the injection in ENTl) labelled axons in BLA (projection density 0.098).

Allen Mouse Brain Connectivity Atlas, experiment 142654100

Made by an adapter reading a database (allen-connectivity@1.3.0).