A mesoscale connectome of the mouse brain

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277854208, an anterograde tracer injected into VMH of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (39% of the injection in VMH) labelled axons in CEA (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 277854208

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TU (Tuberal nucleus) MBA:614 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112228391, an anterograde tracer injected into TU of a wild-type mouse (31% of the injection in TU) labelled axons in LA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 112228391

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CEA (Central amygdalar nucleus) MBA:536 projects to PeF (Perifornical nucleus) MBA:576073704 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in PeF (projection density 0.057).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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SUB (Subiculum) MBA:502 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 506426778, an anterograde tracer injected into SUB of a Gpr26-Cre_KO250 mouse, the tracer Cre-dependent (52% of the injection in SUB) labelled axons in BLA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 506426778

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ENTl (Entorhinal area, lateral part) MBA:918 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146553971, an anterograde tracer injected into ENTl of a wild-type mouse (61% of the injection in ENTl) labelled axons in COAa (projection density 0.075).

Allen Mouse Brain Connectivity Atlas, experiment 146553971

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272874417, an anterograde tracer injected into PVT of a wild-type mouse (38% of the injection in PVT) labelled axons in BLA (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 272874417

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PB (Parabrachial nucleus) MBA:867 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 552284594, an anterograde tracer injected into PB of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (67% of the injection in PB) labelled axons in TR (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 552284594

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CEA (Central amygdalar nucleus) MBA:536 projects to LIN (Linear nucleus of the medulla) MBA:203 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in LIN (projection density 0.055).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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CEA (Central amygdalar nucleus) MBA:536 projects to RE (Nucleus of reuniens) MBA:181 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in RE (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 478095541, an anterograde tracer injected into VMH of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (28% of the injection in VMH) labelled axons in COAa (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 478095541

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PP (Peripeduncular nucleus) MBA:1044 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in PP (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to RR (Midbrain reticular nucleus, retrorubral area) MBA:246 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in RR (projection density 0.069).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in BLA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 552759734, an anterograde tracer injected into VMH of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (35% of the injection in VMH) labelled axons in LA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 552759734

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PRNc (Pontine reticular nucleus, caudal part) MBA:1093 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in PRNc (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 558580065, an anterograde tracer injected into ENTm of a wild-type mouse (60% of the injection in ENTm) labelled axons in AAA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 558580065

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114249084, an anterograde tracer injected into COAp of a wild-type mouse (100% of the injection in COAp) labelled axons in BMA (projection density 0.100).

Allen Mouse Brain Connectivity Atlas, experiment 114249084

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ARH (Arcuate hypothalamic nucleus) MBA:223 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263369222, an anterograde tracer injected into ARH of a Pomc-Cre_BL mouse, the tracer Cre-dependent (64% of the injection in ARH) labelled axons in PA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 263369222

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ENTl (Entorhinal area, lateral part) MBA:918 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301264977, an anterograde tracer injected into ENTl of a Gpr26-Cre_KO250 mouse, the tracer Cre-dependent (62% of the injection in ENTl) labelled axons in CEA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 301264977

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ADP (Anterodorsal preoptic nucleus) MBA:72 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in ADP (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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RE (Nucleus of reuniens) MBA:181 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 538833505, an anterograde tracer injected into RE of a Calb1-T2A-dgCre mouse, the tracer Cre-dependent (64% of the injection in RE) labelled axons in BMA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 538833505

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277854208, an anterograde tracer injected into VMH of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (39% of the injection in VMH) labelled axons in IA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 277854208

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 310439724, an anterograde tracer injected into PIR of a Cux2-CreERT2 mouse, the tracer Cre-dependent (72% of the injection in PIR) labelled axons in COAa (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 310439724

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SUB (Subiculum) MBA:502 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 152994878, an anterograde tracer injected into SUB of a wild-type mouse (58% of the injection in SUB) labelled axons in PA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 152994878

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TT (Taenia tecta) MBA:589 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167029528, an anterograde tracer injected into TT of a Cnnm2-Cre_KD18 mouse, the tracer Cre-dependent (30% of the injection in TT) labelled axons in AAA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 167029528

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to AIv (Agranular insular area, ventral part) MBA:119 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in AIv (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

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ENTl (Entorhinal area, lateral part) MBA:918 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301264977, an anterograde tracer injected into ENTl of a Gpr26-Cre_KO250 mouse, the tracer Cre-dependent (62% of the injection in ENTl) labelled axons in BLA (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 301264977

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to TT (Taenia tecta) MBA:589 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in TT (projection density 0.060).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

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MEA (Medial amygdalar nucleus) MBA:403 projects to PS (Parastrial nucleus) MBA:1109 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in PS (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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CP (Caudoputamen) MBA:672 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 505807398, an anterograde tracer injected into CP of a Ctgf-T2A-dgCre mouse, the tracer Cre-dependent (33% of the injection in CP) labelled axons in BLA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 505807398

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AUDd (Dorsal auditory area) MBA:1011 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158314278, an anterograde tracer injected into AUDd of a wild-type mouse (67% of the injection in AUDd) labelled axons in LA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 158314278

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PT (Parataenial nucleus) MBA:15 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305125123, an anterograde tracer injected into PT of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (68% of the injection in PT) labelled axons in CEA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 305125123

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AAA (Anterior amygdalar area) MBA:23 projects to LM (Lateral mammillary nucleus) MBA:210 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in LM (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

PAG (Periaqueductal gray) MBA:795 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272699357, an anterograde tracer injected into PAG of a Th-Cre_FI172 mouse, the tracer Cre-dependent (69% of the injection in PAG) labelled axons in IA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 272699357

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PVpo (Periventricular hypothalamic nucleus, preoptic part) MBA:133 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in PVpo (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278510903, an anterograde tracer injected into PVT of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (51% of the injection in PVT) labelled axons in CEA (projection density 0.160).

Allen Mouse Brain Connectivity Atlas, experiment 278510903

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CA1 (Field CA1) MBA:382 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182226839, an anterograde tracer injected into CA1 of a Vipr2-Cre_KE2 mouse, the tracer Cre-dependent (44% of the injection in CA1) labelled axons in PA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 182226839

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CEA (Central amygdalar nucleus) MBA:536 projects to AUDd (Dorsal auditory area) MBA:1011 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in AUDd (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PAA (Piriform-amygdalar area) MBA:788 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305645132, an anterograde tracer injected into MEA of a Htr3a-Cre_NO152 mouse, the tracer Cre-dependent (40% of the injection in MEA) labelled axons in PAA (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 305645132

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158258062, an anterograde tracer injected into VMH of a wild-type mouse (20% of the injection in VMH) labelled axons in LA (projection density 0.157).

Allen Mouse Brain Connectivity Atlas, experiment 158258062

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ENTl (Entorhinal area, lateral part) MBA:918 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 287952517, an anterograde tracer injected into ENTl of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (81% of the injection in ENTl) labelled axons in COAa (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 287952517

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CEA (Central amygdalar nucleus) MBA:536 projects to MA3 (Medial accesory oculomotor nucleus) MBA:549009211 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in MA3 (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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MEA (Medial amygdalar nucleus) MBA:403 projects to PC5 (Parvicellular motor 5 nucleus) MBA:549009223 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in PC5 (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to SH (Septohippocampal nucleus) MBA:333 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in SH (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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VTA (Ventral tegmental area) MBA:749 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 171021829, an anterograde tracer injected into VTA of a Cck-IRES-Cre mouse, the tracer Cre-dependent (34% of the injection in VTA) labelled axons in TR (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 171021829

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CP (Caudoputamen) MBA:672 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127711803, an anterograde tracer injected into CP of a wild-type mouse (83% of the injection in CP) labelled axons in AAA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 127711803

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BST (Bed nuclei of the stria terminalis) MBA:351 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 298835859, an anterograde tracer injected into BST of a Drd3-Cre_KI196 mouse, the tracer Cre-dependent (15% of the injection in BST) labelled axons in BMA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 298835859

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PF (Parafascicular nucleus) MBA:930 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263785543, an anterograde tracer injected into PF of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (16% of the injection in PF) labelled axons in LA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 263785543

Made by an adapter reading a database (allen-connectivity@1.3.0).

AIv (Agranular insular area, ventral part) MBA:119 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 166153483, an anterograde tracer injected into AIv of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (57% of the injection in AIv) labelled axons in LA (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 166153483

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TU (Tuberal nucleus) MBA:614 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264248605, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (36% of the injection in TU) labelled axons in BMA (projection density 0.068).

Allen Mouse Brain Connectivity Atlas, experiment 264248605

Made by an adapter reading a database (allen-connectivity@1.3.0).