A mesoscale connectome of the mouse brain

PIR (Piriform area) MBA:961 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158374671, an anterograde tracer injected into PIR of a wild-type mouse (31% of the injection in PIR) labelled axons in COAa (projection density 0.484).

Allen Mouse Brain Connectivity Atlas, experiment 158374671

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CEA (Central amygdalar nucleus) MBA:536 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in SO (projection density 0.067).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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CLA (Claustrum) MBA:583 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 485903475, an anterograde tracer injected into CLA of a Gnb4-IRES2-Cre mouse, the tracer Cre-dependent (40% of the injection in CLA) labelled axons in PA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 485903475

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ENTl (Entorhinal area, lateral part) MBA:918 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127397469, an anterograde tracer injected into ENTl of a wild-type mouse (71% of the injection in ENTl) labelled axons in COAa (projection density 0.105).

Allen Mouse Brain Connectivity Atlas, experiment 127397469

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PAG (Periaqueductal gray) MBA:795 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180524412, an anterograde tracer injected into PAG of a Tac1-IRES2-Cre mouse, the tracer Cre-dependent (26% of the injection in PAG) labelled axons in CEA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 180524412

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114290225, an anterograde tracer injected into VMH of a Nr5a1-Cre mouse, the tracer Cre-dependent (68% of the injection in VMH) labelled axons in MEA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 114290225

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CEA (Central amygdalar nucleus) MBA:536 projects to PVpo (Periventricular hypothalamic nucleus, preoptic part) MBA:133 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in PVpo (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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MEA (Medial amygdalar nucleus) MBA:403 projects to TT (Taenia tecta) MBA:589 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305645132, an anterograde tracer injected into MEA of a Htr3a-Cre_NO152 mouse, the tracer Cre-dependent (40% of the injection in MEA) labelled axons in TT (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 305645132

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RE (Nucleus of reuniens) MBA:181 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278500868, an anterograde tracer injected into RE of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (26% of the injection in RE) labelled axons in BMA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 278500868

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PR (Perireunensis nucleus) MBA:1077 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in PR (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to OT (Olfactory tubercle) MBA:754 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in OT (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301209502, an anterograde tracer injected into PVT of a Efr3a-Cre_NO108 mouse, the tracer Cre-dependent (48% of the injection in PVT) labelled axons in LA (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 301209502

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MEA (Medial amygdalar nucleus) MBA:403 projects to EPv (Endopiriform nucleus, ventral part) MBA:966 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in EPv (projection density 0.101).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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ENTl (Entorhinal area, lateral part) MBA:918 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126116848, an anterograde tracer injected into ENTl of a wild-type mouse (100% of the injection in ENTl) labelled axons in CEA (projection density 0.062).

Allen Mouse Brain Connectivity Atlas, experiment 126116848

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to ProS (Prosubiculum) MBA:484682470 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in ProS (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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MEA (Medial amygdalar nucleus) MBA:403 projects to PR (Perireunensis nucleus) MBA:1077 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in PR (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127139568, an anterograde tracer injected into ENTm of a wild-type mouse (56% of the injection in ENTm) labelled axons in CEA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 127139568

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MEA (Medial amygdalar nucleus) MBA:403 projects to MT (Medial terminal nucleus of the accessory optic tract) MBA:58 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in MT (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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ENTl (Entorhinal area, lateral part) MBA:918 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182226133, an anterograde tracer injected into ENTl of a Otof-Cre mouse, the tracer Cre-dependent (99% of the injection in ENTl) labelled axons in MEA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 182226133

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SPA (Subparafascicular area) MBA:609 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in SPA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PC5 (Parvicellular motor 5 nucleus) MBA:549009223 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in PC5 (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

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DR (Dorsal nucleus raphe) MBA:872 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 128055110, an anterograde tracer injected into DR of a Slc6a4-Cre_ET33 mouse, the tracer Cre-dependent (65% of the injection in DR) labelled axons in AAA (projection density 0.093).

Allen Mouse Brain Connectivity Atlas, experiment 128055110

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LHA (Lateral hypothalamic area) MBA:194 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158373181, an anterograde tracer injected into LHA of a wild-type mouse (35% of the injection in LHA) labelled axons in BA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 158373181

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LA (Lateral amygdalar nucleus) MBA:131 projects to AIv (Agranular insular area, ventral part) MBA:119 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126863090, an anterograde tracer injected into LA of a Kcnc2-Cre mouse, the tracer Cre-dependent (39% of the injection in LA) labelled axons in AIv (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 126863090

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SPFm (Subparafascicular nucleus, magnocellular part) MBA:414 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in SPFm (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to LH (Lateral habenula) MBA:186 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in LH (projection density 0.121).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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MEA (Medial amygdalar nucleus) MBA:403 projects to ADP (Anterodorsal preoptic nucleus) MBA:72 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in ADP (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to AId (Agranular insular area, dorsal part) MBA:104 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in AId (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in TR (projection density 0.159).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 298050269, an anterograde tracer injected into PVT of a Lypd6-Cre_KL156 mouse, the tracer Cre-dependent (45% of the injection in PVT) labelled axons in IA (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 298050269

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 552759734, an anterograde tracer injected into VMH of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (35% of the injection in VMH) labelled axons in COAp (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 552759734

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MM (Medial mammillary nucleus) MBA:491 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158314987, an anterograde tracer injected into MM of a wild-type mouse (26% of the injection in MM) labelled axons in BMA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 158314987

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ENTl (Entorhinal area, lateral part) MBA:918 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 142654100, an anterograde tracer injected into ENTl of a wild-type mouse (91% of the injection in ENTl) labelled axons in TR (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 142654100

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to B (Barrington's nucleus) MBA:280 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in B (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

Made by an adapter reading a database (allen-connectivity@1.3.0).

SNr (Substantia nigra, reticular part) MBA:381 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 478096249, an anterograde tracer injected into SNr of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (41% of the injection in SNr) labelled axons in BA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 478096249

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PIR (Piriform area) MBA:961 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267150949, an anterograde tracer injected into COAp of a Slc17a7-IRES2-Cre mouse, the tracer Cre-dependent (53% of the injection in COAp) labelled axons in PIR (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 267150949

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CEA (Central amygdalar nucleus) MBA:536 projects to PAG (Periaqueductal gray) MBA:795 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in PAG (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264319363, an anterograde tracer injected into VMH of a Esr1-2A-Cre mouse, the tracer Cre-dependent (29% of the injection in VMH) labelled axons in COAp (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 264319363

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to MOs (Secondary motor area) MBA:993 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277710753, an anterograde tracer injected into BLA of a wild-type mouse (49% of the injection in BLA) labelled axons in MOs (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 277710753

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to CM (Central medial nucleus of the thalamus) MBA:599 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in CM (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

LA (Lateral amygdalar nucleus) MBA:131 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126863090, an anterograde tracer injected into LA of a Kcnc2-Cre mouse, the tracer Cre-dependent (39% of the injection in LA) labelled axons in IA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 126863090

Made by an adapter reading a database (allen-connectivity@1.3.0).

AIv (Agranular insular area, ventral part) MBA:119 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 513773998, an anterograde tracer injected into AIv of a Ntng2-IRES2-Cre mouse, the tracer Cre-dependent (43% of the injection in AIv) labelled axons in PA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 513773998

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PGRNl (Paragigantocellular reticular nucleus, lateral part) MBA:978 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in PGRNl (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to LH (Lateral habenula) MBA:186 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in LH (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SSp-bfd (Primary somatosensory area, barrel field) MBA:329 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in SSp-bfd (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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CEA (Central amygdalar nucleus) MBA:536 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in PA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to CP (Caudoputamen) MBA:672 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in CP (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

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PL (Prelimbic area) MBA:972 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263106036, an anterograde tracer injected into PL of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (46% of the injection in PL) labelled axons in AAA (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 263106036

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to BAC (Bed nucleus of the anterior commissure) MBA:287 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in BAC (projection density 0.282).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175106053, an anterograde tracer injected into AHN of a wild-type mouse (20% of the injection in AHN) labelled axons in MEA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 175106053

Made by an adapter reading a database (allen-connectivity@1.3.0).