A mesoscale connectome of the mouse brain

CEA (Central amygdalar nucleus) MBA:536 projects to MRN (Midbrain reticular nucleus) MBA:128 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 241279261, an anterograde tracer injected into CEA of a Tac2-IRES2-Cre mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in MRN (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 241279261

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PL (Prelimbic area) MBA:972 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305618479, an anterograde tracer injected into PL of a Glt25d2-Cre_NF107 mouse, the tracer Cre-dependent (50% of the injection in PL) labelled axons in BLA (projection density 0.083).

Allen Mouse Brain Connectivity Atlas, experiment 305618479

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ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 518745840, an anterograde tracer injected into ENTm of a Grp-Cre_KH288 mouse, the tracer Cre-dependent (69% of the injection in ENTm) labelled axons in LA (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 518745840

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to NDB (Diagonal band nucleus) MBA:596 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in NDB (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 303708513, an anterograde tracer injected into VMH of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (29% of the injection in VMH) labelled axons in MEA (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 303708513

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MEA (Medial amygdalar nucleus) MBA:403 projects to PP (Peripeduncular nucleus) MBA:1044 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in PP (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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MEA (Medial amygdalar nucleus) MBA:403 projects to NLOT (Nucleus of the lateral olfactory tract) MBA:619 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286303000, an anterograde tracer injected into MEA of a Slc6a3-Cre mouse, the tracer Cre-dependent (97% of the injection in MEA) labelled axons in NLOT (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 286303000

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MEA (Medial amygdalar nucleus) MBA:403 projects to ARH (Arcuate hypothalamic nucleus) MBA:223 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in ARH (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to VISli (Laterointermediate area) MBA:312782574 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in VISli (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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PMv (Ventral premammillary nucleus) MBA:1004 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 299654968, an anterograde tracer injected into PMv of a Tac1-IRES2-Cre mouse, the tracer Cre-dependent (33% of the injection in PMv) labelled axons in MEA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 299654968

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278510903, an anterograde tracer injected into PVT of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (51% of the injection in PVT) labelled axons in MEA (projection density 0.108).

Allen Mouse Brain Connectivity Atlas, experiment 278510903

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CEA (Central amygdalar nucleus) MBA:536 projects to PeF (Perifornical nucleus) MBA:576073704 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in PeF (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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TT (Taenia tecta) MBA:589 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 133286030, an anterograde tracer injected into TT of a wild-type mouse (43% of the injection in TT) labelled axons in CEA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 133286030

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CLA (Claustrum) MBA:583 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 485903475, an anterograde tracer injected into CLA of a Gnb4-IRES2-Cre mouse, the tracer Cre-dependent (40% of the injection in CLA) labelled axons in CEA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 485903475

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to MPN (Medial preoptic nucleus) MBA:515 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in MPN (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

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AAA (Anterior amygdalar area) MBA:23 projects to VM (Ventral medial nucleus of the thalamus) MBA:685 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in VM (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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MEA (Medial amygdalar nucleus) MBA:403 projects to ACVII (Accessory facial motor nucleus) MBA:576 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in ACVII (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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IPN (Interpeduncular nucleus) MBA:100 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267538735, an anterograde tracer injected into IPN of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (20% of the injection in IPN) labelled axons in AAA (projection density 0.115).

Allen Mouse Brain Connectivity Atlas, experiment 267538735

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to FS (Fundus of striatum) MBA:998 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in FS (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ENTl (Entorhinal area, lateral part) MBA:918 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in ENTl (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to TU (Tuberal nucleus) MBA:614 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 309386361, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (97% of the injection in MEA) labelled axons in TU (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 309386361

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RE (Nucleus of reuniens) MBA:181 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 174957972, an anterograde tracer injected into RE of a wild-type mouse (25% of the injection in RE) labelled axons in PA (projection density 0.112).

Allen Mouse Brain Connectivity Atlas, experiment 174957972

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114249084, an anterograde tracer injected into COAp of a wild-type mouse (100% of the injection in COAp) labelled axons in BLA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 114249084

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CA1 (Field CA1) MBA:382 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286610923, an anterograde tracer injected into CA1 of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (85% of the injection in CA1) labelled axons in BMA (projection density 0.055).

Allen Mouse Brain Connectivity Atlas, experiment 286610923

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MEA (Medial amygdalar nucleus) MBA:403 projects to DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in DMH (projection density 0.060).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to MEPO (Median preoptic nucleus) MBA:452 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in MEPO (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

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CEA (Central amygdalar nucleus) MBA:536 projects to PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in PIL (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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PAG (Periaqueductal gray) MBA:795 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272699357, an anterograde tracer injected into PAG of a Th-Cre_FI172 mouse, the tracer Cre-dependent (69% of the injection in PAG) labelled axons in COAa (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 272699357

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in BA (projection density 0.073).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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TR (Postpiriform transition area) MBA:566 projects to IG (Induseum griseum) MBA:19 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126653015, an anterograde tracer injected into TR of a wild-type mouse (99% of the injection in TR) labelled axons in IG (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 126653015

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ECT (Ectorhinal area) MBA:895 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180435652, an anterograde tracer injected into ECT of a wild-type mouse (38% of the injection in ECT) labelled axons in MEA (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 180435652

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146660293, an anterograde tracer injected into AHN of a wild-type mouse (28% of the injection in AHN) labelled axons in CEA (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 146660293

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AIp (Agranular insular area, posterior part) MBA:111 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272827141, an anterograde tracer injected into AIp of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (53% of the injection in AIp) labelled axons in BMA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 272827141

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AAA (Anterior amygdalar area) MBA:23 projects to RE (Nucleus of reuniens) MBA:181 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in RE (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in PA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

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MEA (Medial amygdalar nucleus) MBA:403 projects to SNc (Substantia nigra, compact part) MBA:374 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in SNc (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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MEA (Medial amygdalar nucleus) MBA:403 projects to AUDv (Ventral auditory area) MBA:1018 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in AUDv (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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ORBl (Orbital area, lateral part) MBA:723 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170721670, an anterograde tracer injected into ORBl of a wild-type mouse (70% of the injection in ORBl) labelled axons in BLA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 170721670

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MEA (Medial amygdalar nucleus) MBA:403 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in TR (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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DR (Dorsal nucleus raphe) MBA:872 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168300027, an anterograde tracer injected into DR of a Slc6a4-Cre_ET33 mouse, the tracer Cre-dependent (27% of the injection in DR) labelled axons in IA (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 168300027

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CP (Caudoputamen) MBA:672 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 485846989, an anterograde tracer injected into CP of a Ntng2-IRES2-Cre mouse, the tracer Cre-dependent (29% of the injection in CP) labelled axons in BLA (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 485846989

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to BAC (Bed nucleus of the anterior commissure) MBA:287 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114249084, an anterograde tracer injected into COAp of a wild-type mouse (100% of the injection in COAp) labelled axons in BAC (projection density 0.214).

Allen Mouse Brain Connectivity Atlas, experiment 114249084

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MEA (Medial amygdalar nucleus) MBA:403 projects to HATA (Hippocampo-amygdalar transition area) MBA:589508447 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in HATA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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LHA (Lateral hypothalamic area) MBA:194 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176887774, an anterograde tracer injected into LHA of a Esr1-2A-Cre mouse, the tracer Cre-dependent (23% of the injection in LHA) labelled axons in CEA (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 176887774

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DR (Dorsal nucleus raphe) MBA:872 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 128055110, an anterograde tracer injected into DR of a Slc6a4-Cre_ET33 mouse, the tracer Cre-dependent (65% of the injection in DR) labelled axons in MEA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 128055110

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MEA (Medial amygdalar nucleus) MBA:403 projects to MA3 (Medial accesory oculomotor nucleus) MBA:549009211 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in MA3 (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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AON (Anterior olfactory nucleus) MBA:159 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114755099, an anterograde tracer injected into AON of a wild-type mouse (30% of the injection in AON) labelled axons in BMA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 114755099

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NDB (Diagonal band nucleus) MBA:596 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158257355, an anterograde tracer injected into NDB of a wild-type mouse (18% of the injection in NDB) labelled axons in AAA (projection density 0.073).

Allen Mouse Brain Connectivity Atlas, experiment 158257355

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to TT (Taenia tecta) MBA:589 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267150949, an anterograde tracer injected into COAp of a Slc17a7-IRES2-Cre mouse, the tracer Cre-dependent (53% of the injection in COAp) labelled axons in TT (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 267150949

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PB (Parabrachial nucleus) MBA:867 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301016900, an anterograde tracer injected into PB of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (61% of the injection in PB) labelled axons in CEA (projection density 0.178).

Allen Mouse Brain Connectivity Atlas, experiment 301016900

Made by an adapter reading a database (allen-connectivity@1.3.0).