A mesoscale connectome of the mouse brain

CEA (Central amygdalar nucleus) MBA:536 projects to PR (Perireunensis nucleus) MBA:1077 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in PR (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

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MEA (Medial amygdalar nucleus) MBA:403 projects to VLPO (Ventrolateral preoptic nucleus) MBA:689 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in VLPO (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to RR (Midbrain reticular nucleus, retrorubral area) MBA:246 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in RR (projection density 0.073).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

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LSr (Lateral septal nucleus, rostral (rostroventral) part) MBA:258 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293434703, an anterograde tracer injected into LSr of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (32% of the injection in LSr) labelled axons in PA (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 293434703

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PSTN (Parasubthalamic nucleus) MBA:364 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in PSTN (projection density 0.073).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

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MEA (Medial amygdalar nucleus) MBA:403 projects to PVHd (Paraventricular hypothalamic nucleus, descending division) MBA:63 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in PVHd (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to MA (Magnocellular nucleus) MBA:298 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in MA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to CM (Central medial nucleus of the thalamus) MBA:599 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in CM (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to VPMpc (Ventral posteromedial nucleus of the thalamus, parvicellular part) MBA:741 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in VPMpc (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

PT (Parataenial nucleus) MBA:15 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305449231, an anterograde tracer injected into PT of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (57% of the injection in PT) labelled axons in IA (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 305449231

Made by an adapter reading a database (allen-connectivity@1.3.0).

SNr (Substantia nigra, reticular part) MBA:381 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 478096249, an anterograde tracer injected into SNr of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (41% of the injection in SNr) labelled axons in COAa (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 478096249

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to RM (Nucleus raphe magnus) MBA:206 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 241279261, an anterograde tracer injected into CEA of a Tac2-IRES2-Cre mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in RM (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 241279261

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to MRN (Midbrain reticular nucleus) MBA:128 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in MRN (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to VLPO (Ventrolateral preoptic nucleus) MBA:689 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in VLPO (projection density 0.070).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to BAC (Bed nucleus of the anterior commissure) MBA:287 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in BAC (projection density 0.071).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267150949, an anterograde tracer injected into COAp of a Slc17a7-IRES2-Cre mouse, the tracer Cre-dependent (53% of the injection in COAp) labelled axons in MPO (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 267150949

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PD (Posterodorsal preoptic nucleus) MBA:914 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in PD (projection density 0.066).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SSp-ul (Primary somatosensory area, upper limb) MBA:369 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in SSp-ul (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to EW (Edinger-Westphal nucleus) MBA:975 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181889764, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (55% of the injection in CEA) labelled axons in EW (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 181889764

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PVi (Periventricular hypothalamic nucleus, intermediate part) MBA:118 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in PVi (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to CA1 (Field CA1) MBA:382 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in CA1 (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to RR (Midbrain reticular nucleus, retrorubral area) MBA:246 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in RR (projection density 0.069).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127396051, an anterograde tracer injected into PIL of a wild-type mouse (32% of the injection in PIL) labelled axons in AAA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 127396051

Made by an adapter reading a database (allen-connectivity@1.3.0).

CA1 (Field CA1) MBA:382 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 122641784, an anterograde tracer injected into CA1 of a wild-type mouse (87% of the injection in CA1) labelled axons in PA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 122641784

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in COAa (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

NLOT (Nucleus of the lateral olfactory tract) MBA:619 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159151138, an anterograde tracer injected into NLOT of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (67% of the injection in NLOT) labelled axons in CEA (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 159151138

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AVP (Anteroventral preoptic nucleus) MBA:263 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in AVP (projection density 0.085).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PC5 (Parvicellular motor 5 nucleus) MBA:549009223 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in PC5 (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in MPO (projection density 0.059).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to RE (Nucleus of reuniens) MBA:181 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in RE (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 523705737, an anterograde tracer injected into AHN of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (16% of the injection in AHN) labelled axons in TR (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 523705737

Made by an adapter reading a database (allen-connectivity@1.3.0).

MD (Mediodorsal nucleus of thalamus) MBA:362 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 558697990, an anterograde tracer injected into MD of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (93% of the injection in MD) labelled axons in BLA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 558697990

Made by an adapter reading a database (allen-connectivity@1.3.0).

MD (Mediodorsal nucleus of thalamus) MBA:362 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272875132, an anterograde tracer injected into MD of a wild-type mouse (36% of the injection in MD) labelled axons in CEA (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 272875132

Made by an adapter reading a database (allen-connectivity@1.3.0).

AAA (Anterior amygdalar area) MBA:23 projects to Pa4 (Paratrochlear nucleus) MBA:606826663 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in Pa4 (projection density 0.173).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182337561, an anterograde tracer injected into VMH of a Nr5a1-Cre mouse, the tracer Cre-dependent (65% of the injection in VMH) labelled axons in BMA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 182337561

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PS (Parastrial nucleus) MBA:1109 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in PS (projection density 0.055).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to PIR (Piriform area) MBA:961 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in PIR (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to TU (Tuberal nucleus) MBA:614 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267813932, an anterograde tracer injected into BMA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (38% of the injection in BMA) labelled axons in TU (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 267813932

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ZI (Zona incerta) MBA:797 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175018829, an anterograde tracer injected into ZI of a wild-type mouse (29% of the injection in ZI) labelled axons in BMA (projection density 0.143).

Allen Mouse Brain Connectivity Atlas, experiment 175018829

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CEA (Central amygdalar nucleus) MBA:536 projects to ACVII (Accessory facial motor nucleus) MBA:576 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in ACVII (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to MA3 (Medial accesory oculomotor nucleus) MBA:549009211 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181889764, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (55% of the injection in CEA) labelled axons in MA3 (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 181889764

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to TMv (Tuberomammillary nucleus, ventral part) MBA:1 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in TMv (projection density 0.068).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to STN (Subthalamic nucleus) MBA:470 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in STN (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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ENTl (Entorhinal area, lateral part) MBA:918 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146553971, an anterograde tracer injected into ENTl of a wild-type mouse (61% of the injection in ENTl) labelled axons in MEA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 146553971

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PIR (Piriform area) MBA:961 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 298720898, an anterograde tracer injected into PIR of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (63% of the injection in PIR) labelled axons in AAA (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 298720898

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PARN (Parvicellular reticular nucleus) MBA:852 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in PARN (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to NTS (Nucleus of the solitary tract) MBA:651 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in NTS (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 308641549, an anterograde tracer injected into VMH of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (38% of the injection in VMH) labelled axons in BLA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 308641549

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to LT (Lateral terminal nucleus of the accessory optic tract) MBA:66 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in LT (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to CM (Central medial nucleus of the thalamus) MBA:599 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181889764, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (55% of the injection in CEA) labelled axons in CM (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 181889764

Made by an adapter reading a database (allen-connectivity@1.3.0).