A mesoscale connectome of the mouse brain

VISC (Visceral area) MBA:677 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180917660, an anterograde tracer injected into VISC of a wild-type mouse (60% of the injection in VISC) labelled axons in COAa (projection density 0.085).

Allen Mouse Brain Connectivity Atlas, experiment 180917660

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PMv (Ventral premammillary nucleus) MBA:1004 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in PMv (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

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MEA (Medial amygdalar nucleus) MBA:403 projects to LT (Lateral terminal nucleus of the accessory optic tract) MBA:66 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in LT (projection density 0.063).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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NDB (Diagonal band nucleus) MBA:596 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158257355, an anterograde tracer injected into NDB of a wild-type mouse (18% of the injection in NDB) labelled axons in MEA (projection density 0.078).

Allen Mouse Brain Connectivity Atlas, experiment 158257355

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MEA (Medial amygdalar nucleus) MBA:403 projects to AD (Anterodorsal nucleus) MBA:64 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in AD (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to LSr (Lateral septal nucleus, rostral (rostroventral) part) MBA:258 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in LSr (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

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MEA (Medial amygdalar nucleus) MBA:403 projects to AVPV (Anteroventral periventricular nucleus) MBA:272 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in AVPV (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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CEA (Central amygdalar nucleus) MBA:536 projects to MOs (Secondary motor area) MBA:993 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in MOs (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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MEA (Medial amygdalar nucleus) MBA:403 projects to FS (Fundus of striatum) MBA:998 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305645132, an anterograde tracer injected into MEA of a Htr3a-Cre_NO152 mouse, the tracer Cre-dependent (40% of the injection in MEA) labelled axons in FS (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 305645132

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DP (Dorsal peduncular area) MBA:814 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112597496, an anterograde tracer injected into DP of a wild-type mouse (68% of the injection in DP) labelled axons in BMA (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 112597496

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MEA (Medial amygdalar nucleus) MBA:403 projects to RCH (Retrochiasmatic area) MBA:173 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in RCH (projection density 0.140).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to FS (Fundus of striatum) MBA:998 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in FS (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

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MEA (Medial amygdalar nucleus) MBA:403 projects to EW (Edinger-Westphal nucleus) MBA:975 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in EW (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304617742, an anterograde tracer injected into DMH of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (12% of the injection in DMH) labelled axons in BMA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 304617742

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PA (Posterior amygdalar nucleus) MBA:780 projects to AHN (Anterior hypothalamic nucleus) MBA:88 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304721447, an anterograde tracer injected into PA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (69% of the injection in PA) labelled axons in AHN (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 304721447

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158258062, an anterograde tracer injected into VMH of a wild-type mouse (20% of the injection in VMH) labelled axons in AAA (projection density 0.073).

Allen Mouse Brain Connectivity Atlas, experiment 158258062

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NLOT (Nucleus of the lateral olfactory tract) MBA:619 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 294174996, an anterograde tracer injected into NLOT of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (97% of the injection in NLOT) labelled axons in AAA (projection density 0.066).

Allen Mouse Brain Connectivity Atlas, experiment 294174996

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in AAA (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

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CEA (Central amygdalar nucleus) MBA:536 projects to PARN (Parvicellular reticular nucleus) MBA:852 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in PARN (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

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AAA (Anterior amygdalar area) MBA:23 projects to RT (Reticular nucleus of the thalamus) MBA:262 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in RT (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to AIp (Agranular insular area, posterior part) MBA:111 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in AIp (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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CEA (Central amygdalar nucleus) MBA:536 projects to SNc (Substantia nigra, compact part) MBA:374 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in SNc (projection density 0.113).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146985623, an anterograde tracer injected into MEA of a wild-type mouse (94% of the injection in MEA) labelled axons in AAA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 146985623

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CA1 (Field CA1) MBA:382 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 122641784, an anterograde tracer injected into CA1 of a wild-type mouse (87% of the injection in CA1) labelled axons in BMA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 122641784

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ENTl (Entorhinal area, lateral part) MBA:918 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126116848, an anterograde tracer injected into ENTl of a wild-type mouse (100% of the injection in ENTl) labelled axons in LA (projection density 0.092).

Allen Mouse Brain Connectivity Atlas, experiment 126116848

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MEA (Medial amygdalar nucleus) MBA:403 projects to SPFm (Subparafascicular nucleus, magnocellular part) MBA:414 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in SPFm (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to EPd (Endopiriform nucleus, dorsal part) MBA:952 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in EPd (projection density 0.079).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in DMH (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PAA (Piriform-amygdalar area) MBA:788 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in PAA (projection density 0.148).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SSp-tr (Primary somatosensory area, trunk) MBA:361 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in SSp-tr (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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PA (Posterior amygdalar nucleus) MBA:780 projects to VMH (Ventromedial hypothalamic nucleus) MBA:693 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 545415593, an anterograde tracer injected into PA of a Npr3-IRES2-Cre mouse, the tracer Cre-dependent (53% of the injection in PA) labelled axons in VMH (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 545415593

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BST (Bed nuclei of the stria terminalis) MBA:351 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 117312486, an anterograde tracer injected into BST of a wild-type mouse (83% of the injection in BST) labelled axons in MEA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 117312486

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CEA (Central amygdalar nucleus) MBA:536 projects to PIR (Piriform area) MBA:961 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in PIR (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in AAA (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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AON (Anterior olfactory nucleus) MBA:159 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114755099, an anterograde tracer injected into AON of a wild-type mouse (30% of the injection in AON) labelled axons in IA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 114755099

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CEA (Central amygdalar nucleus) MBA:536 projects to MRN (Midbrain reticular nucleus) MBA:128 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in MRN (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in MPO (projection density 0.060).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PVHd (Paraventricular hypothalamic nucleus, descending division) MBA:63 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in PVHd (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

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MEA (Medial amygdalar nucleus) MBA:403 projects to TU (Tuberal nucleus) MBA:614 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in TU (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

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MEA (Medial amygdalar nucleus) MBA:403 projects to TMd (Tuberomammillary nucleus, dorsal part) MBA:1126 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in TMd (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

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PAG (Periaqueductal gray) MBA:795 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 266500714, an anterograde tracer injected into PAG of a Th-Cre_FI172 mouse, the tracer Cre-dependent (49% of the injection in PAG) labelled axons in CEA (projection density 0.066).

Allen Mouse Brain Connectivity Atlas, experiment 266500714

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MEA (Medial amygdalar nucleus) MBA:403 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in COAa (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to MRN (Midbrain reticular nucleus) MBA:128 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in MRN (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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MEA (Medial amygdalar nucleus) MBA:403 projects to PMd (Dorsal premammillary nucleus) MBA:980 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293469501, an anterograde tracer injected into MEA of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (77% of the injection in MEA) labelled axons in PMd (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 293469501

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to TU (Tuberal nucleus) MBA:614 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286303000, an anterograde tracer injected into MEA of a Slc6a3-Cre mouse, the tracer Cre-dependent (97% of the injection in MEA) labelled axons in TU (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 286303000

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120875111, an anterograde tracer injected into PVT of a wild-type mouse (51% of the injection in PVT) labelled axons in IA (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 120875111

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to ARH (Arcuate hypothalamic nucleus) MBA:223 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in ARH (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

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CEA (Central amygdalar nucleus) MBA:536 projects to DMX (Dorsal motor nucleus of the vagus nerve) MBA:839 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in DMX (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to SAG (Nucleus sagulum) MBA:271 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305321177, an anterograde tracer injected into BLA of a Slc32a1-IRES-Cre mouse, the tracer Cre-dependent (37% of the injection in BLA) labelled axons in SAG (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 305321177

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305645132, an anterograde tracer injected into MEA of a Htr3a-Cre_NO152 mouse, the tracer Cre-dependent (40% of the injection in MEA) labelled axons in CEA (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 305645132

Made by an adapter reading a database (allen-connectivity@1.3.0).