A mesoscale connectome of the mouse brain

DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 266174751, an anterograde tracer injected into DMH of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (11% of the injection in DMH) labelled axons in BLA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 266174751

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CP (Caudoputamen) MBA:672 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 513775257, an anterograde tracer injected into CP of a Ntng2-IRES2-Cre mouse, the tracer Cre-dependent (36% of the injection in CP) labelled axons in LA (projection density 0.088).

Allen Mouse Brain Connectivity Atlas, experiment 513775257

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BST (Bed nuclei of the stria terminalis) MBA:351 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267764292, an anterograde tracer injected into BST of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (62% of the injection in BST) labelled axons in BMA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 267764292

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PAG (Periaqueductal gray) MBA:795 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182280207, an anterograde tracer injected into PAG of a Vipr2-Cre_KE2 mouse, the tracer Cre-dependent (32% of the injection in PAG) labelled axons in BLA (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 182280207

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PMv (Ventral premammillary nucleus) MBA:1004 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263780018, an anterograde tracer injected into PMv of a Slc6a3-Cre mouse, the tracer Cre-dependent (74% of the injection in PMv) labelled axons in MEA (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 263780018

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MM (Medial mammillary nucleus) MBA:491 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158314987, an anterograde tracer injected into MM of a wild-type mouse (26% of the injection in MM) labelled axons in PA (projection density 0.094).

Allen Mouse Brain Connectivity Atlas, experiment 158314987

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CEA (Central amygdalar nucleus) MBA:536 projects to ENTl (Entorhinal area, lateral part) MBA:918 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in ENTl (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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TU (Tuberal nucleus) MBA:614 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176888661, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (40% of the injection in TU) labelled axons in LA (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 176888661

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CEA (Central amygdalar nucleus) MBA:536 projects to AVP (Anteroventral preoptic nucleus) MBA:263 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in AVP (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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ENTl (Entorhinal area, lateral part) MBA:918 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127397469, an anterograde tracer injected into ENTl of a wild-type mouse (71% of the injection in ENTl) labelled axons in MEA (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 127397469

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MEA (Medial amygdalar nucleus) MBA:403 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in CEA (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

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ZI (Zona incerta) MBA:797 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175018829, an anterograde tracer injected into ZI of a wild-type mouse (29% of the injection in ZI) labelled axons in IA (projection density 0.096).

Allen Mouse Brain Connectivity Atlas, experiment 175018829

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to FS (Fundus of striatum) MBA:998 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267813932, an anterograde tracer injected into BMA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (38% of the injection in BMA) labelled axons in FS (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 267813932

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AId (Agranular insular area, dorsal part) MBA:104 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 313327028, an anterograde tracer injected into AId of a Glt25d2-Cre_NF107 mouse, the tracer Cre-dependent (63% of the injection in AId) labelled axons in CEA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 313327028

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CEA (Central amygdalar nucleus) MBA:536 projects to ACB (Nucleus accumbens) MBA:56 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in ACB (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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MEA (Medial amygdalar nucleus) MBA:403 projects to EPv (Endopiriform nucleus, ventral part) MBA:966 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in EPv (projection density 0.074).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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LP (Lateral posterior nucleus of the thalamus) MBA:218 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183282970, an anterograde tracer injected into LP of a Calb2-IRES-Cre mouse, the tracer Cre-dependent (97% of the injection in LP) labelled axons in LA (projection density 0.061).

Allen Mouse Brain Connectivity Atlas, experiment 183282970

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ENTl (Entorhinal area, lateral part) MBA:918 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183225124, an anterograde tracer injected into ENTl of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (80% of the injection in ENTl) labelled axons in COAp (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 183225124

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CEA (Central amygdalar nucleus) MBA:536 projects to RCH (Retrochiasmatic area) MBA:173 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in RCH (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

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NDB (Diagonal band nucleus) MBA:596 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 177605425, an anterograde tracer injected into NDB of a Chat-IRES-Cre-neo mouse, the tracer Cre-dependent (62% of the injection in NDB) labelled axons in MEA (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 177605425

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CEA (Central amygdalar nucleus) MBA:536 projects to RCH (Retrochiasmatic area) MBA:173 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in RCH (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

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PIR (Piriform area) MBA:961 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 131068390, an anterograde tracer injected into PIR of a wild-type mouse (95% of the injection in PIR) labelled axons in BLA (projection density 0.067).

Allen Mouse Brain Connectivity Atlas, experiment 131068390

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PIR (Piriform area) MBA:961 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 551350026, an anterograde tracer injected into PIR of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (73% of the injection in PIR) labelled axons in AAA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 551350026

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TU (Tuberal nucleus) MBA:614 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176888661, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (40% of the injection in TU) labelled axons in CEA (projection density 0.115).

Allen Mouse Brain Connectivity Atlas, experiment 176888661

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to LHA (Lateral hypothalamic area) MBA:194 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in LHA (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to ECT (Ectorhinal area) MBA:895 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in ECT (projection density 0.077).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to MOs (Secondary motor area) MBA:993 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in MOs (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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CEA (Central amygdalar nucleus) MBA:536 projects to AD (Anterodorsal nucleus) MBA:64 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in AD (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to CLA (Claustrum) MBA:583 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277710753, an anterograde tracer injected into BLA of a wild-type mouse (49% of the injection in BLA) labelled axons in CLA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 277710753

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CEA (Central amygdalar nucleus) MBA:536 projects to PN (Paranigral nucleus) MBA:607344830 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in PN (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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PMv (Ventral premammillary nucleus) MBA:1004 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 294316542, an anterograde tracer injected into PMv of a Tac1-IRES2-Cre mouse, the tracer Cre-dependent (26% of the injection in PMv) labelled axons in IA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 294316542

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TR (Postpiriform transition area) MBA:566 projects to MA (Magnocellular nucleus) MBA:298 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126653015, an anterograde tracer injected into TR of a wild-type mouse (99% of the injection in TR) labelled axons in MA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 126653015

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MEA (Medial amygdalar nucleus) MBA:403 projects to IV (Trochlear nucleus) MBA:115 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in IV (projection density 0.052).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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MEA (Medial amygdalar nucleus) MBA:403 projects to PVi (Periventricular hypothalamic nucleus, intermediate part) MBA:118 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in PVi (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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ORBl (Orbital area, lateral part) MBA:723 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180709230, an anterograde tracer injected into ORBl of a wild-type mouse (34% of the injection in ORBl) labelled axons in IA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 180709230

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PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127396051, an anterograde tracer injected into PIL of a wild-type mouse (32% of the injection in PIL) labelled axons in IA (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 127396051

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CEA (Central amygdalar nucleus) MBA:536 projects to ZI (Zona incerta) MBA:797 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in ZI (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PeF (Perifornical nucleus) MBA:576073704 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in PeF (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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CP (Caudoputamen) MBA:672 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113036264, an anterograde tracer injected into CP of a wild-type mouse (52% of the injection in CP) labelled axons in CEA (projection density 0.114).

Allen Mouse Brain Connectivity Atlas, experiment 113036264

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to ILA (Infralimbic area) MBA:44 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in ILA (projection density 0.054).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

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VTA (Ventral tegmental area) MBA:749 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127798146, an anterograde tracer injected into VTA of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (45% of the injection in VTA) labelled axons in BLA (projection density 0.061).

Allen Mouse Brain Connectivity Atlas, experiment 127798146

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305092904, an anterograde tracer injected into AHN of a Lypd6-Cre_KL156 mouse, the tracer Cre-dependent (36% of the injection in AHN) labelled axons in CEA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 305092904

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to SH (Septohippocampal nucleus) MBA:333 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in SH (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to VMPO (Ventromedial preoptic nucleus) MBA:576073699 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in VMPO (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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MEA (Medial amygdalar nucleus) MBA:403 projects to IMD (Intermediodorsal nucleus of the thalamus) MBA:59 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in IMD (projection density 0.112).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 552759734, an anterograde tracer injected into VMH of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (35% of the injection in VMH) labelled axons in IA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 552759734

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PT (Parataenial nucleus) MBA:15 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159331462, an anterograde tracer injected into PT of a Cck-IRES-Cre mouse, the tracer Cre-dependent (36% of the injection in PT) labelled axons in MEA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 159331462

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PVH (Paraventricular hypothalamic nucleus) MBA:38 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 300888673, an anterograde tracer injected into PVH of a Tac1-IRES2-Cre mouse, the tracer Cre-dependent (26% of the injection in PVH) labelled axons in CEA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 300888673

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CEA (Central amygdalar nucleus) MBA:536 projects to V (Motor nucleus of trigeminal) MBA:621 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120281646, an anterograde tracer injected into CEA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (98% of the injection in CEA) labelled axons in V (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 120281646

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CEA (Central amygdalar nucleus) MBA:536 projects to IV (Trochlear nucleus) MBA:115 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in IV (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

Made by an adapter reading a database (allen-connectivity@1.3.0).