A mesoscale connectome of the mouse brain

ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127139568, an anterograde tracer injected into ENTm of a wild-type mouse (56% of the injection in ENTm) labelled axons in COAp (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 127139568

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to RCH (Retrochiasmatic area) MBA:173 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in RCH (projection density 0.057).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to ADP (Anterodorsal preoptic nucleus) MBA:72 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in ADP (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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MEA (Medial amygdalar nucleus) MBA:403 projects to RR (Midbrain reticular nucleus, retrorubral area) MBA:246 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in RR (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

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AAA (Anterior amygdalar area) MBA:23 projects to VTA (Ventral tegmental area) MBA:749 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in VTA (projection density 0.108).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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MEA (Medial amygdalar nucleus) MBA:403 projects to VISa (Anterior area) MBA:312782546 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in VISa (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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MEA (Medial amygdalar nucleus) MBA:403 projects to SubG (Subgeniculate nucleus) MBA:321 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in SubG (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to MA (Magnocellular nucleus) MBA:298 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in MA (projection density 0.109).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PSTN (Parasubthalamic nucleus) MBA:364 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in PSTN (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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MEA (Medial amygdalar nucleus) MBA:403 projects to ADP (Anterodorsal preoptic nucleus) MBA:72 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in ADP (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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CLA (Claustrum) MBA:583 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 485903475, an anterograde tracer injected into CLA of a Gnb4-IRES2-Cre mouse, the tracer Cre-dependent (40% of the injection in CLA) labelled axons in LA (projection density 0.078).

Allen Mouse Brain Connectivity Atlas, experiment 485903475

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CEA (Central amygdalar nucleus) MBA:536 projects to Xi (Xiphoid thalamic nucleus) MBA:560581559 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in Xi (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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MEA (Medial amygdalar nucleus) MBA:403 projects to NI (Nucleus incertus) MBA:604 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in NI (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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CEA (Central amygdalar nucleus) MBA:536 projects to RM (Nucleus raphe magnus) MBA:206 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in RM (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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MS (Medial septal nucleus) MBA:564 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278259822, an anterograde tracer injected into MS of a Oxtr-Cre_ON66 mouse, the tracer Cre-dependent (67% of the injection in MS) labelled axons in PA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 278259822

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in DMH (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VMH (Ventromedial hypothalamic nucleus) MBA:693 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in VMH (projection density 0.121).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 287952517, an anterograde tracer injected into ENTl of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (81% of the injection in ENTl) labelled axons in LA (projection density 0.062).

Allen Mouse Brain Connectivity Atlas, experiment 287952517

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PP (Peripeduncular nucleus) MBA:1044 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in PP (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in DMH (projection density 0.048).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in MPO (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

Made by an adapter reading a database (allen-connectivity@1.3.0).

BST (Bed nuclei of the stria terminalis) MBA:351 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 194948535, an anterograde tracer injected into BST of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (58% of the injection in BST) labelled axons in CEA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 194948535

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MEA (Medial amygdalar nucleus) MBA:403 projects to MPN (Medial preoptic nucleus) MBA:515 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in MPN (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to RCH (Retrochiasmatic area) MBA:173 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in RCH (projection density 0.120).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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MD (Mediodorsal nucleus of thalamus) MBA:362 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175739791, an anterograde tracer injected into MD of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (39% of the injection in MD) labelled axons in BA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 175739791

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DR (Dorsal nucleus raphe) MBA:872 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 128055110, an anterograde tracer injected into DR of a Slc6a4-Cre_ET33 mouse, the tracer Cre-dependent (65% of the injection in DR) labelled axons in BA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 128055110

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MPN (Medial preoptic nucleus) MBA:515 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127909584, an anterograde tracer injected into MPN of a wild-type mouse (16% of the injection in MPN) labelled axons in CEA (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 127909584

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in IA (projection density 0.113).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

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SF (Septofimbrial nucleus) MBA:310 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 147162736, an anterograde tracer injected into SF of a wild-type mouse (13% of the injection in SF) labelled axons in PA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 147162736

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to ENTl (Entorhinal area, lateral part) MBA:918 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in ENTl (projection density 0.057).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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IF (Interfascicular nucleus raphe) MBA:12 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301732962, an anterograde tracer injected into IF of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (21% of the injection in IF) labelled axons in CEA (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 301732962

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176886958, an anterograde tracer injected into VMH of a Esr1-2A-Cre mouse, the tracer Cre-dependent (33% of the injection in VMH) labelled axons in IA (projection density 0.054).

Allen Mouse Brain Connectivity Atlas, experiment 176886958

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MEA (Medial amygdalar nucleus) MBA:403 projects to LH (Lateral habenula) MBA:186 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in LH (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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MOs (Secondary motor area) MBA:993 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180719293, an anterograde tracer injected into MOs of a wild-type mouse (81% of the injection in MOs) labelled axons in BLA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 180719293

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TU (Tuberal nucleus) MBA:614 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176888661, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (40% of the injection in TU) labelled axons in BMA (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 176888661

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PMv (Ventral premammillary nucleus) MBA:1004 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267813932, an anterograde tracer injected into BMA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (38% of the injection in BMA) labelled axons in PMv (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 267813932

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PT (Parataenial nucleus) MBA:15 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176897793, an anterograde tracer injected into PT of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (66% of the injection in PT) labelled axons in PA (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 176897793

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to V (Motor nucleus of trigeminal) MBA:621 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in V (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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CEA (Central amygdalar nucleus) MBA:536 projects to IntG (Intermediate geniculate nucleus) MBA:563807439 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in IntG (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VMPO (Ventromedial preoptic nucleus) MBA:576073699 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in VMPO (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181057754, an anterograde tracer injected into AHN of a wild-type mouse (24% of the injection in AHN) labelled axons in COAa (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 181057754

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 558580065, an anterograde tracer injected into ENTm of a wild-type mouse (60% of the injection in ENTm) labelled axons in LA (projection density 0.068).

Allen Mouse Brain Connectivity Atlas, experiment 558580065

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to AHN (Anterior hypothalamic nucleus) MBA:88 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in AHN (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

LSv (Lateral septal nucleus, ventral part) MBA:266 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167654731, an anterograde tracer injected into LSv of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (21% of the injection in LSv) labelled axons in IA (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 167654731

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LHA (Lateral hypothalamic area) MBA:194 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176887774, an anterograde tracer injected into LHA of a Esr1-2A-Cre mouse, the tracer Cre-dependent (23% of the injection in LHA) labelled axons in MEA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 176887774

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 287225747, an anterograde tracer injected into PIR of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (89% of the injection in PIR) labelled axons in IA (projection density 0.057).

Allen Mouse Brain Connectivity Atlas, experiment 287225747

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286728190, an anterograde tracer injected into PIR of a Cux2-CreERT2 mouse, the tracer Cre-dependent (55% of the injection in PIR) labelled axons in COAp (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 286728190

Made by an adapter reading a database (allen-connectivity@1.3.0).

VTA (Ventral tegmental area) MBA:749 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127798146, an anterograde tracer injected into VTA of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (45% of the injection in VTA) labelled axons in AAA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 127798146

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PD (Posterodorsal preoptic nucleus) MBA:914 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PD (projection density 0.085).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

PH (Posterior hypothalamic nucleus) MBA:946 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175374275, an anterograde tracer injected into PH of a wild-type mouse (32% of the injection in PH) labelled axons in COAa (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 175374275

Made by an adapter reading a database (allen-connectivity@1.3.0).