A mesoscale connectome of the mouse brain

CEA (Central amygdalar nucleus) MBA:536 projects to MD (Mediodorsal nucleus of thalamus) MBA:362 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in MD (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to DP (Dorsal peduncular area) MBA:814 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in DP (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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MEA (Medial amygdalar nucleus) MBA:403 projects to RE (Nucleus of reuniens) MBA:181 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in RE (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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MEA (Medial amygdalar nucleus) MBA:403 projects to SPA (Subparafascicular area) MBA:609 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in SPA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

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ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127139568, an anterograde tracer injected into ENTm of a wild-type mouse (56% of the injection in ENTm) labelled axons in BLA (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 127139568

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MEA (Medial amygdalar nucleus) MBA:403 projects to PVHd (Paraventricular hypothalamic nucleus, descending division) MBA:63 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in PVHd (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

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ORBl (Orbital area, lateral part) MBA:723 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180709230, an anterograde tracer injected into ORBl of a wild-type mouse (34% of the injection in ORBl) labelled axons in MEA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 180709230

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RE (Nucleus of reuniens) MBA:181 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278500868, an anterograde tracer injected into RE of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (26% of the injection in RE) labelled axons in BLA (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 278500868

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RE (Nucleus of reuniens) MBA:181 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 204832205, an anterograde tracer injected into RE of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (28% of the injection in RE) labelled axons in BLA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 204832205

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MEA (Medial amygdalar nucleus) MBA:403 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in IA (projection density 0.072).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277480964, an anterograde tracer injected into COAp of a wild-type mouse (47% of the injection in COAp) labelled axons in TR (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 277480964

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CEA (Central amygdalar nucleus) MBA:536 projects to LC (Locus ceruleus) MBA:147 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in LC (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PR (Perireunensis nucleus) MBA:1077 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in PR (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to SCH (Suprachiasmatic nucleus) MBA:286 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in SCH (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to OT (Olfactory tubercle) MBA:754 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in OT (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

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CEA (Central amygdalar nucleus) MBA:536 projects to NTS (Nucleus of the solitary tract) MBA:651 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120281646, an anterograde tracer injected into CEA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (98% of the injection in CEA) labelled axons in NTS (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 120281646

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to BST (Bed nuclei of the stria terminalis) MBA:351 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in BST (projection density 0.208).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 266174751, an anterograde tracer injected into DMH of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (11% of the injection in DMH) labelled axons in TR (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 266174751

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MEA (Medial amygdalar nucleus) MBA:403 projects to SSp-un (Primary somatosensory area, unassigned) MBA:182305689 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in SSp-un (projection density 0.059).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

LA (Lateral amygdalar nucleus) MBA:131 projects to TEa (Temporal association areas) MBA:541 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 516846757, an anterograde tracer injected into LA of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (71% of the injection in LA) labelled axons in TEa (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 516846757

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MD (Mediodorsal nucleus of thalamus) MBA:362 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 268076421, an anterograde tracer injected into MD of a Vipr2-Cre_KE2 mouse, the tracer Cre-dependent (60% of the injection in MD) labelled axons in BLA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 268076421

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MOB (Main olfactory bulb) MBA:507 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146921849, an anterograde tracer injected into MOB of a Cdhr1-Cre_KG66 mouse, the tracer Cre-dependent (99% of the injection in MOB) labelled axons in BA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 146921849

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AId (Agranular insular area, dorsal part) MBA:104 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 296048512, an anterograde tracer injected into AId of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (43% of the injection in AId) labelled axons in BLA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 296048512

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PB (Parabrachial nucleus) MBA:867 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301016900, an anterograde tracer injected into PB of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (61% of the injection in PB) labelled axons in IA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 301016900

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SUM (Supramammillary nucleus) MBA:525 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in SUM (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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MEA (Medial amygdalar nucleus) MBA:403 projects to AUDp (Primary auditory area) MBA:1002 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in AUDp (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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PIR (Piriform area) MBA:961 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 300109663, an anterograde tracer injected into PIR of a Drd3-Cre_KI196 mouse, the tracer Cre-dependent (97% of the injection in PIR) labelled axons in COAa (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 300109663

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AAA (Anterior amygdalar area) MBA:23 projects to ENTl (Entorhinal area, lateral part) MBA:918 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in ENTl (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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PL (Prelimbic area) MBA:972 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 266582782, an anterograde tracer injected into PL of a Grp-Cre_KH288 mouse, the tracer Cre-dependent (89% of the injection in PL) labelled axons in BLA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 266582782

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to PS (Parastrial nucleus) MBA:1109 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in PS (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ACB (Nucleus accumbens) MBA:56 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267150949, an anterograde tracer injected into COAp of a Slc17a7-IRES2-Cre mouse, the tracer Cre-dependent (53% of the injection in COAp) labelled axons in ACB (projection density 0.061).

Allen Mouse Brain Connectivity Atlas, experiment 267150949

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CM (Central medial nucleus of the thalamus) MBA:599 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158841171, an anterograde tracer injected into CM of a wild-type mouse (17% of the injection in CM) labelled axons in BLA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 158841171

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AAA (Anterior amygdalar area) MBA:23 projects to AId (Agranular insular area, dorsal part) MBA:104 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in AId (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 171485060, an anterograde tracer injected into PIR of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (100% of the injection in PIR) labelled axons in TR (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 171485060

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146984209, an anterograde tracer injected into PIR of a wild-type mouse (62% of the injection in PIR) labelled axons in TR (projection density 0.126).

Allen Mouse Brain Connectivity Atlas, experiment 146984209

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CLI (Central linear nucleus raphe) MBA:591 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 310176384, an anterograde tracer injected into CLI of a Calb2-IRES-Cre mouse, the tracer Cre-dependent (29% of the injection in CLI) labelled axons in TR (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 310176384

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MEA (Medial amygdalar nucleus) MBA:403 projects to SPFm (Subparafascicular nucleus, magnocellular part) MBA:414 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in SPFm (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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PA (Posterior amygdalar nucleus) MBA:780 projects to ADP (Anterodorsal preoptic nucleus) MBA:72 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304721447, an anterograde tracer injected into PA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (69% of the injection in PA) labelled axons in ADP (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 304721447

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CEA (Central amygdalar nucleus) MBA:536 projects to STN (Subthalamic nucleus) MBA:470 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in STN (projection density 0.072).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to BST (Bed nuclei of the stria terminalis) MBA:351 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in BST (projection density 0.363).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to CLA (Claustrum) MBA:583 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in CLA (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

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MEA (Medial amygdalar nucleus) MBA:403 projects to Pa4 (Paratrochlear nucleus) MBA:606826663 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in Pa4 (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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CEA (Central amygdalar nucleus) MBA:536 projects to BST (Bed nuclei of the stria terminalis) MBA:351 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in BST (projection density 0.052).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

Made by an adapter reading a database (allen-connectivity@1.3.0).

TR (Postpiriform transition area) MBA:566 projects to BAC (Bed nucleus of the anterior commissure) MBA:287 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126653015, an anterograde tracer injected into TR of a wild-type mouse (99% of the injection in TR) labelled axons in BAC (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 126653015

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VTA (Ventral tegmental area) MBA:749 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165975096, an anterograde tracer injected into VTA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (17% of the injection in VTA) labelled axons in TR (projection density 0.069).

Allen Mouse Brain Connectivity Atlas, experiment 165975096

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PVp (Periventricular hypothalamic nucleus, posterior part) MBA:126 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264078267, an anterograde tracer injected into PVp of a Slc32a1-IRES-Cre mouse, the tracer Cre-dependent (43% of the injection in PVp) labelled axons in CEA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 264078267

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to MEPO (Median preoptic nucleus) MBA:452 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in MEPO (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PC5 (Parvicellular motor 5 nucleus) MBA:549009223 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in PC5 (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158374671, an anterograde tracer injected into PIR of a wild-type mouse (31% of the injection in PIR) labelled axons in BA (projection density 0.422).

Allen Mouse Brain Connectivity Atlas, experiment 158374671

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PAG (Periaqueductal gray) MBA:795 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182280207, an anterograde tracer injected into PAG of a Vipr2-Cre_KE2 mouse, the tracer Cre-dependent (32% of the injection in PAG) labelled axons in AAA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 182280207

Made by an adapter reading a database (allen-connectivity@1.3.0).