A mesoscale connectome of the mouse brain

TU (Tuberal nucleus) MBA:614 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 177890956, an anterograde tracer injected into TU of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (18% of the injection in TU) labelled axons in IA (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 177890956

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ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 585026021, an anterograde tracer injected into ENTm of a wild-type mouse (87% of the injection in ENTm) labelled axons in IA (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 585026021

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CEA (Central amygdalar nucleus) MBA:536 projects to ISN (Inferior salivatory nucleus) MBA:106 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in ISN (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PVT (Paraventricular nucleus of the thalamus) MBA:149 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in PVT (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

PA (Posterior amygdalar nucleus) MBA:780 projects to SCH (Suprachiasmatic nucleus) MBA:286 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304721447, an anterograde tracer injected into PA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (69% of the injection in PA) labelled axons in SCH (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 304721447

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CEA (Central amygdalar nucleus) MBA:536 projects to SAG (Nucleus sagulum) MBA:271 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in SAG (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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CEA (Central amygdalar nucleus) MBA:536 projects to PB (Parabrachial nucleus) MBA:867 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in PB (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PMv (Ventral premammillary nucleus) MBA:1004 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in PMv (projection density 0.111).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

RE (Nucleus of reuniens) MBA:181 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265286700, an anterograde tracer injected into RE of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (49% of the injection in RE) labelled axons in AAA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 265286700

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VISC (Visceral area) MBA:677 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180074890, an anterograde tracer injected into VISC of a wild-type mouse (85% of the injection in VISC) labelled axons in IA (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 180074890

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MEA (Medial amygdalar nucleus) MBA:403 projects to SPFm (Subparafascicular nucleus, magnocellular part) MBA:414 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in SPFm (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVp (Periventricular hypothalamic nucleus, posterior part) MBA:126 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PVp (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

AOB (Accessory olfactory bulb) MBA:151 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267760731, an anterograde tracer injected into AOB of a Efr3a-Cre_NO108 mouse, the tracer Cre-dependent (46% of the injection in AOB) labelled axons in COAp (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 267760731

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to NTS (Nucleus of the solitary tract) MBA:651 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in NTS (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PP (Peripeduncular nucleus) MBA:1044 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in PP (projection density 0.057).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

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CS (Superior central nucleus raphe) MBA:679 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 156929391, an anterograde tracer injected into CS of a wild-type mouse (72% of the injection in CS) labelled axons in AAA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 156929391

Made by an adapter reading a database (allen-connectivity@1.3.0).

VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277854916, an anterograde tracer injected into VMH of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (24% of the injection in VMH) labelled axons in MEA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 277854916

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to Pa4 (Paratrochlear nucleus) MBA:606826663 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in Pa4 (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PERI (Perirhinal area) MBA:922 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in PERI (projection density 0.060).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

IMD (Intermediodorsal nucleus of the thalamus) MBA:59 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182185289, an anterograde tracer injected into IMD of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (57% of the injection in IMD) labelled axons in IA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 182185289

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286728190, an anterograde tracer injected into PIR of a Cux2-CreERT2 mouse, the tracer Cre-dependent (55% of the injection in PIR) labelled axons in BLA (projection density 0.066).

Allen Mouse Brain Connectivity Atlas, experiment 286728190

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PSTN (Parasubthalamic nucleus) MBA:364 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in PSTN (projection density 0.172).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

Made by an adapter reading a database (allen-connectivity@1.3.0).

TU (Tuberal nucleus) MBA:614 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 177890956, an anterograde tracer injected into TU of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (18% of the injection in TU) labelled axons in CEA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 177890956

Made by an adapter reading a database (allen-connectivity@1.3.0).

LSv (Lateral septal nucleus, ventral part) MBA:266 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167654731, an anterograde tracer injected into LSv of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (21% of the injection in LSv) labelled axons in MEA (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 167654731

Made by an adapter reading a database (allen-connectivity@1.3.0).

LHA (Lateral hypothalamic area) MBA:194 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165035106, an anterograde tracer injected into LHA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (43% of the injection in LHA) labelled axons in COAa (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 165035106

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to MARN (Magnocellular reticular nucleus) MBA:307 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 241279261, an anterograde tracer injected into CEA of a Tac2-IRES2-Cre mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in MARN (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 241279261

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CEA (Central amygdalar nucleus) MBA:536 projects to NR (Nucleus of Roller) MBA:177 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in NR (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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MD (Mediodorsal nucleus of thalamus) MBA:362 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175739791, an anterograde tracer injected into MD of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (39% of the injection in MD) labelled axons in AAA (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 175739791

Made by an adapter reading a database (allen-connectivity@1.3.0).

EPd (Endopiriform nucleus, dorsal part) MBA:952 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158321996, an anterograde tracer injected into EPd of a wild-type mouse (37% of the injection in EPd) labelled axons in COAa (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 158321996

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 523705737, an anterograde tracer injected into AHN of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (16% of the injection in AHN) labelled axons in IA (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 523705737

Made by an adapter reading a database (allen-connectivity@1.3.0).

MS (Medial septal nucleus) MBA:564 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 100141597, an anterograde tracer injected into MS of a wild-type mouse (58% of the injection in MS) labelled axons in AAA (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 100141597

Made by an adapter reading a database (allen-connectivity@1.3.0).

PA (Posterior amygdalar nucleus) MBA:780 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304721447, an anterograde tracer injected into PA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (69% of the injection in PA) labelled axons in BA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 304721447

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to VMPO (Ventromedial preoptic nucleus) MBA:576073699 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in VMPO (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to IPN (Interpeduncular nucleus) MBA:100 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in IPN (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to ORBm (Orbital area, medial part) MBA:731 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in ORBm (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

VTA (Ventral tegmental area) MBA:749 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127651139, an anterograde tracer injected into VTA of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (27% of the injection in VTA) labelled axons in TR (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 127651139

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AAA (Anterior amygdalar area) MBA:23 projects to IAD (Interanterodorsal nucleus of the thalamus) MBA:1113 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in IAD (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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RE (Nucleus of reuniens) MBA:181 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175374982, an anterograde tracer injected into RE of a wild-type mouse (64% of the injection in RE) labelled axons in COAa (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 175374982

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PVT (Paraventricular nucleus of the thalamus) MBA:149 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in PVT (projection density 0.052).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PN (Paranigral nucleus) MBA:607344830 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in PN (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

TU (Tuberal nucleus) MBA:614 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 177890956, an anterograde tracer injected into TU of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (18% of the injection in TU) labelled axons in PA (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 177890956

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 171485060, an anterograde tracer injected into PIR of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (100% of the injection in PIR) labelled axons in AAA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 171485060

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to ME (Median eminence) MBA:10671 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 309386361, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (97% of the injection in MEA) labelled axons in ME (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 309386361

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MEA (Medial amygdalar nucleus) MBA:403 projects to PMv (Ventral premammillary nucleus) MBA:1004 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in PMv (projection density 0.054).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

Made by an adapter reading a database (allen-connectivity@1.3.0).

LHA (Lateral hypothalamic area) MBA:194 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127470271, an anterograde tracer injected into LHA of a wild-type mouse (31% of the injection in LHA) labelled axons in IA (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 127470271

Made by an adapter reading a database (allen-connectivity@1.3.0).

AIp (Agranular insular area, posterior part) MBA:111 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272827141, an anterograde tracer injected into AIp of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (53% of the injection in AIp) labelled axons in CEA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 272827141

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to Xi (Xiphoid thalamic nucleus) MBA:560581559 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in Xi (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 171485060, an anterograde tracer injected into PIR of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (100% of the injection in PIR) labelled axons in COAa (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 171485060

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AVP (Anteroventral preoptic nucleus) MBA:263 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in AVP (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PMv (Ventral premammillary nucleus) MBA:1004 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PMv (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).