A mesoscale connectome of the mouse brain

PL (Prelimbic area) MBA:972 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263106036, an anterograde tracer injected into PL of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (46% of the injection in PL) labelled axons in IA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 263106036

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MOs (Secondary motor area) MBA:993 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 166082128, an anterograde tracer injected into MOs of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (87% of the injection in MOs) labelled axons in CEA (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 166082128

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DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 266174751, an anterograde tracer injected into DMH of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (11% of the injection in DMH) labelled axons in IA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 266174751

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to SI (Substantia innominata) MBA:342 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in SI (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

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CEA (Central amygdalar nucleus) MBA:536 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in LA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to LSv (Lateral septal nucleus, ventral part) MBA:266 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in LSv (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

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ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 585026021, an anterograde tracer injected into ENTm of a wild-type mouse (87% of the injection in ENTm) labelled axons in TR (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 585026021

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VTA (Ventral tegmental area) MBA:749 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127651139, an anterograde tracer injected into VTA of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (27% of the injection in VTA) labelled axons in LA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 127651139

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PB (Parabrachial nucleus) MBA:867 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in PB (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to MPN (Medial preoptic nucleus) MBA:515 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in MPN (projection density 0.138).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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ZI (Zona incerta) MBA:797 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113095845, an anterograde tracer injected into ZI of a wild-type mouse (81% of the injection in ZI) labelled axons in BMA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 113095845

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VISC (Visceral area) MBA:677 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180436360, an anterograde tracer injected into VISC of a wild-type mouse (30% of the injection in VISC) labelled axons in AAA (projection density 0.111).

Allen Mouse Brain Connectivity Atlas, experiment 180436360

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 508775240, an anterograde tracer injected into BMA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (61% of the injection in BMA) labelled axons in SO (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 508775240

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MEA (Medial amygdalar nucleus) MBA:403 projects to LM (Lateral mammillary nucleus) MBA:210 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in LM (projection density 0.040).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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ENTl (Entorhinal area, lateral part) MBA:918 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 232311959, an anterograde tracer injected into ENTl of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (76% of the injection in ENTl) labelled axons in COAa (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 232311959

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MEA (Medial amygdalar nucleus) MBA:403 projects to RH (Rhomboid nucleus) MBA:189 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in RH (projection density 0.054).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PR (Perireunensis nucleus) MBA:1077 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PR (projection density 0.085).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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MEA (Medial amygdalar nucleus) MBA:403 projects to PeF (Perifornical nucleus) MBA:576073704 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in PeF (projection density 0.071).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to AHN (Anterior hypothalamic nucleus) MBA:88 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in AHN (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

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CEA (Central amygdalar nucleus) MBA:536 projects to PS (Parastrial nucleus) MBA:1109 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265945645, an anterograde tracer injected into CEA of a Prkcd-GluCla-CFP-IRES-Cre mouse, the tracer Cre-dependent (96% of the injection in CEA) labelled axons in PS (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 265945645

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to AIp (Agranular insular area, posterior part) MBA:111 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277710753, an anterograde tracer injected into BLA of a wild-type mouse (49% of the injection in BLA) labelled axons in AIp (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 277710753

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MEA (Medial amygdalar nucleus) MBA:403 projects to NDB (Diagonal band nucleus) MBA:596 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 549361039, an anterograde tracer injected into MEA of a Oxtr-T2A-Cre mouse, the tracer Cre-dependent (61% of the injection in MEA) labelled axons in NDB (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 549361039

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AIp (Agranular insular area, posterior part) MBA:111 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286775476, an anterograde tracer injected into AIp of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (43% of the injection in AIp) labelled axons in TR (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 286775476

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to LPO (Lateral preoptic area) MBA:226 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in LPO (projection density 0.048).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

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ENTl (Entorhinal area, lateral part) MBA:918 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114472145, an anterograde tracer injected into ENTl of a wild-type mouse (94% of the injection in ENTl) labelled axons in BA (projection density 0.076).

Allen Mouse Brain Connectivity Atlas, experiment 114472145

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to ACAv (Anterior cingulate area, ventral part) MBA:48 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in ACAv (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

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MEA (Medial amygdalar nucleus) MBA:403 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in MPO (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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IPN (Interpeduncular nucleus) MBA:100 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304859407, an anterograde tracer injected into IPN of a Drd3-Cre_KI196 mouse, the tracer Cre-dependent (29% of the injection in IPN) labelled axons in AAA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 304859407

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MOp (Primary motor area) MBA:985 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 100141780, an anterograde tracer injected into MOp of a wild-type mouse (100% of the injection in MOp) labelled axons in CEA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 100141780

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LSv (Lateral septal nucleus, ventral part) MBA:266 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167654731, an anterograde tracer injected into LSv of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (21% of the injection in LSv) labelled axons in CEA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 167654731

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LSv (Lateral septal nucleus, ventral part) MBA:266 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167654731, an anterograde tracer injected into LSv of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (21% of the injection in LSv) labelled axons in BMA (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 167654731

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LHA (Lateral hypothalamic area) MBA:194 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127470271, an anterograde tracer injected into LHA of a wild-type mouse (31% of the injection in LHA) labelled axons in BLA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 127470271

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PH (Posterior hypothalamic nucleus) MBA:946 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127710392, an anterograde tracer injected into PH of a wild-type mouse (31% of the injection in PH) labelled axons in MEA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 127710392

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CEA (Central amygdalar nucleus) MBA:536 projects to OT (Olfactory tubercle) MBA:754 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in OT (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ILA (Infralimbic area) MBA:44 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in ILA (projection density 0.074).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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ENTl (Entorhinal area, lateral part) MBA:918 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 299857096, an anterograde tracer injected into ENTl of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (90% of the injection in ENTl) labelled axons in IA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 299857096

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to MA (Magnocellular nucleus) MBA:298 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in MA (projection density 0.096).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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SI (Substantia innominata) MBA:342 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146045723, an anterograde tracer injected into SI of a wild-type mouse (39% of the injection in SI) labelled axons in TR (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 146045723

Made by an adapter reading a database (allen-connectivity@1.3.0).

AIp (Agranular insular area, posterior part) MBA:111 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286775476, an anterograde tracer injected into AIp of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (43% of the injection in AIp) labelled axons in MEA (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 286775476

Made by an adapter reading a database (allen-connectivity@1.3.0).

SI (Substantia innominata) MBA:342 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 299404532, an anterograde tracer injected into SI of a Ntrk1-IRES-Cre mouse, the tracer Cre-dependent (57% of the injection in SI) labelled axons in BMA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 299404532

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CEA (Central amygdalar nucleus) MBA:536 projects to RL (Rostral linear nucleus raphe) MBA:197 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in RL (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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MEA (Medial amygdalar nucleus) MBA:403 projects to PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in PIL (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182226133, an anterograde tracer injected into ENTl of a Otof-Cre mouse, the tracer Cre-dependent (99% of the injection in ENTl) labelled axons in IA (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 182226133

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MEA (Medial amygdalar nucleus) MBA:403 projects to ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in ENTm (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PVpo (Periventricular hypothalamic nucleus, preoptic part) MBA:133 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in PVpo (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to BAC (Bed nucleus of the anterior commissure) MBA:287 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in BAC (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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PAG (Periaqueductal gray) MBA:795 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272699357, an anterograde tracer injected into PAG of a Th-Cre_FI172 mouse, the tracer Cre-dependent (69% of the injection in PAG) labelled axons in TR (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 272699357

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CEA (Central amygdalar nucleus) MBA:536 projects to SSp-ll (Primary somatosensory area, lower limb) MBA:337 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in SSp-ll (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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LP (Lateral posterior nucleus of the thalamus) MBA:218 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 166267651, an anterograde tracer injected into LP of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (30% of the injection in LP) labelled axons in LA (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 166267651

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MEA (Medial amygdalar nucleus) MBA:403 projects to IMD (Intermediodorsal nucleus of the thalamus) MBA:59 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in IMD (projection density 0.107).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).