A mesoscale connectome of the mouse brain

AAA (Anterior amygdalar area) MBA:23 projects to CS (Superior central nucleus raphe) MBA:679 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in CS (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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MEA (Medial amygdalar nucleus) MBA:403 projects to DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in DMH (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to SPA (Subparafascicular area) MBA:609 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in SPA (projection density 0.106).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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SUB (Subiculum) MBA:502 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127222723, an anterograde tracer injected into SUB of a wild-type mouse (30% of the injection in SUB) labelled axons in PA (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 127222723

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to OT (Olfactory tubercle) MBA:754 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in OT (projection density 0.146).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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MOs (Secondary motor area) MBA:993 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 166055636, an anterograde tracer injected into MOs of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (82% of the injection in MOs) labelled axons in BLA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 166055636

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MEA (Medial amygdalar nucleus) MBA:403 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146985623, an anterograde tracer injected into MEA of a wild-type mouse (94% of the injection in MEA) labelled axons in SO (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 146985623

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BST (Bed nuclei of the stria terminalis) MBA:351 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176886238, an anterograde tracer injected into BST of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in BST) labelled axons in MEA (projection density 0.139).

Allen Mouse Brain Connectivity Atlas, experiment 176886238

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in COAa (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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MEA (Medial amygdalar nucleus) MBA:403 projects to MA (Magnocellular nucleus) MBA:298 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in MA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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TU (Tuberal nucleus) MBA:614 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112228391, an anterograde tracer injected into TU of a wild-type mouse (31% of the injection in TU) labelled axons in PA (projection density 0.065).

Allen Mouse Brain Connectivity Atlas, experiment 112228391

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ENTl (Entorhinal area, lateral part) MBA:918 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114472145, an anterograde tracer injected into ENTl of a wild-type mouse (94% of the injection in ENTl) labelled axons in BMA (projection density 0.154).

Allen Mouse Brain Connectivity Atlas, experiment 114472145

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CEA (Central amygdalar nucleus) MBA:536 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in TR (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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CEA (Central amygdalar nucleus) MBA:536 projects to PB (Parabrachial nucleus) MBA:867 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in PB (projection density 0.073).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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SI (Substantia innominata) MBA:342 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126841788, an anterograde tracer injected into SI of a Chat-IRES-Cre-neo mouse, the tracer Cre-dependent (89% of the injection in SI) labelled axons in AAA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 126841788

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286728190, an anterograde tracer injected into PIR of a Cux2-CreERT2 mouse, the tracer Cre-dependent (55% of the injection in PIR) labelled axons in BA (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 286728190

Made by an adapter reading a database (allen-connectivity@1.3.0).

BST (Bed nuclei of the stria terminalis) MBA:351 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 117312486, an anterograde tracer injected into BST of a wild-type mouse (83% of the injection in BST) labelled axons in CEA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 117312486

Made by an adapter reading a database (allen-connectivity@1.3.0).

PSTN (Parasubthalamic nucleus) MBA:364 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264696942, an anterograde tracer injected into PSTN of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (25% of the injection in PSTN) labelled axons in BMA (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 264696942

Made by an adapter reading a database (allen-connectivity@1.3.0).

PB (Parabrachial nucleus) MBA:867 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 552284594, an anterograde tracer injected into PB of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (67% of the injection in PB) labelled axons in CEA (projection density 0.152).

Allen Mouse Brain Connectivity Atlas, experiment 552284594

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to VMH (Ventromedial hypothalamic nucleus) MBA:693 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 508775240, an anterograde tracer injected into BMA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (61% of the injection in BMA) labelled axons in VMH (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 508775240

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to MA (Magnocellular nucleus) MBA:298 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in MA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to RE (Nucleus of reuniens) MBA:181 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in RE (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to ECT (Ectorhinal area) MBA:895 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in ECT (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AVPV (Anteroventral periventricular nucleus) MBA:272 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in AVPV (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

CP (Caudoputamen) MBA:672 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114399934, an anterograde tracer injected into CP of a wild-type mouse (96% of the injection in CP) labelled axons in COAa (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 114399934

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MEA (Medial amygdalar nucleus) MBA:403 projects to Xi (Xiphoid thalamic nucleus) MBA:560581559 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in Xi (projection density 0.095).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 299896150, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (99% of the injection in MEA) labelled axons in BA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 299896150

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 549361039, an anterograde tracer injected into MEA of a Oxtr-T2A-Cre mouse, the tracer Cre-dependent (61% of the injection in MEA) labelled axons in IA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 549361039

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to AIp (Agranular insular area, posterior part) MBA:111 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168302154, an anterograde tracer injected into COAp of a Grik4-Cre mouse, the tracer Cre-dependent (81% of the injection in COAp) labelled axons in AIp (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 168302154

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MM (Medial mammillary nucleus) MBA:491 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126710740, an anterograde tracer injected into MM of a wild-type mouse (17% of the injection in MM) labelled axons in PA (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 126710740

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MPO (Medial preoptic area) MBA:523 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158738180, an anterograde tracer injected into MPO of a wild-type mouse (27% of the injection in MPO) labelled axons in MEA (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 158738180

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PIR (Piriform area) MBA:961 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 485875903, an anterograde tracer injected into PIR of a Gnb4-IRES2-Cre mouse, the tracer Cre-dependent (55% of the injection in PIR) labelled axons in AAA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 485875903

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PAA (Piriform-amygdalar area) MBA:788 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 122641078, an anterograde tracer injected into PAA of a wild-type mouse (48% of the injection in PAA) labelled axons in AAA (projection density 0.371).

Allen Mouse Brain Connectivity Atlas, experiment 122641078

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PARN (Parvicellular reticular nucleus) MBA:852 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in PARN (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to PL (Prelimbic area) MBA:972 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in PL (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to TRN (Tegmental reticular nucleus) MBA:574 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in TRN (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 313325371, an anterograde tracer injected into VMH of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (18% of the injection in VMH) labelled axons in BA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 313325371

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SI (Substantia innominata) MBA:342 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305026861, an anterograde tracer injected into SI of a Drd3-Cre_KI196 mouse, the tracer Cre-dependent (78% of the injection in SI) labelled axons in IA (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 305026861

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to SBPV (Subparaventricular zone) MBA:347 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in SBPV (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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TT (Taenia tecta) MBA:589 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 133286030, an anterograde tracer injected into TT of a wild-type mouse (43% of the injection in TT) labelled axons in BMA (projection density 0.059).

Allen Mouse Brain Connectivity Atlas, experiment 133286030

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SGN (Suprageniculate nucleus) MBA:325 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182805258, an anterograde tracer injected into SGN of a Vipr2-Cre_KE2 mouse, the tracer Cre-dependent (30% of the injection in SGN) labelled axons in CEA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 182805258

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PVp (Periventricular hypothalamic nucleus, posterior part) MBA:126 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264078267, an anterograde tracer injected into PVp of a Slc32a1-IRES-Cre mouse, the tracer Cre-dependent (43% of the injection in PVp) labelled axons in MEA (projection density 0.032).

Allen Mouse Brain Connectivity Atlas, experiment 264078267

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PIR (Piriform area) MBA:961 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184259031, an anterograde tracer injected into PIR of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (98% of the injection in PIR) labelled axons in TR (projection density 0.095).

Allen Mouse Brain Connectivity Atlas, experiment 184259031

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263106751, an anterograde tracer injected into PVT of a Ntrk1-IRES-Cre mouse, the tracer Cre-dependent (80% of the injection in PVT) labelled axons in BMA (projection density 0.061).

Allen Mouse Brain Connectivity Atlas, experiment 263106751

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MEA (Medial amygdalar nucleus) MBA:403 projects to Pa4 (Paratrochlear nucleus) MBA:606826663 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in Pa4 (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VMH (Ventromedial hypothalamic nucleus) MBA:693 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in VMH (projection density 0.069).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to VISal (Anterolateral visual area) MBA:402 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in VISal (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184259031, an anterograde tracer injected into PIR of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (98% of the injection in PIR) labelled axons in BA (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 184259031

Made by an adapter reading a database (allen-connectivity@1.3.0).

AUDp (Primary auditory area) MBA:1002 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146858006, an anterograde tracer injected into AUDp of a wild-type mouse (56% of the injection in AUDp) labelled axons in LA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 146858006

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to LHA (Lateral hypothalamic area) MBA:194 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in LHA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

Made by an adapter reading a database (allen-connectivity@1.3.0).