A mesoscale connectome of the mouse brain

SUM (Supramammillary nucleus) MBA:525 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304947804, an anterograde tracer injected into SUM of a Nos1-CreERT2 mouse, the tracer Cre-dependent (41% of the injection in SUM) labelled axons in AAA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 304947804

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ILA (Infralimbic area) MBA:44 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286313491, an anterograde tracer injected into ILA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (52% of the injection in ILA) labelled axons in COAa (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 286313491

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MEA (Medial amygdalar nucleus) MBA:403 projects to AVP (Anteroventral preoptic nucleus) MBA:263 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in AVP (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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MEA (Medial amygdalar nucleus) MBA:403 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305645132, an anterograde tracer injected into MEA of a Htr3a-Cre_NO152 mouse, the tracer Cre-dependent (40% of the injection in MEA) labelled axons in PA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 305645132

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to AVPV (Anteroventral periventricular nucleus) MBA:272 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in AVPV (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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ENTl (Entorhinal area, lateral part) MBA:918 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 142654100, an anterograde tracer injected into ENTl of a wild-type mouse (91% of the injection in ENTl) labelled axons in AAA (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 142654100

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ENTl (Entorhinal area, lateral part) MBA:918 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272414403, an anterograde tracer injected into ENTl of a wild-type mouse (71% of the injection in ENTl) labelled axons in IA (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 272414403

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MEA (Medial amygdalar nucleus) MBA:403 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in BMA (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PAA (Piriform-amygdalar area) MBA:788 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in PAA (projection density 0.063).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 558580065, an anterograde tracer injected into ENTm of a wild-type mouse (60% of the injection in ENTm) labelled axons in PA (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 558580065

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVHd (Paraventricular hypothalamic nucleus, descending division) MBA:63 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PVHd (projection density 0.062).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304617742, an anterograde tracer injected into DMH of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (12% of the injection in DMH) labelled axons in PA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 304617742

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CEA (Central amygdalar nucleus) MBA:536 projects to PVHd (Paraventricular hypothalamic nucleus, descending division) MBA:63 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 241279261, an anterograde tracer injected into CEA of a Tac2-IRES2-Cre mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in PVHd (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 241279261

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VTA (Ventral tegmental area) MBA:749 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127798146, an anterograde tracer injected into VTA of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (45% of the injection in VTA) labelled axons in CEA (projection density 0.057).

Allen Mouse Brain Connectivity Atlas, experiment 127798146

Made by an adapter reading a database (allen-connectivity@1.3.0).

CP (Caudoputamen) MBA:672 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 117317884, an anterograde tracer injected into CP of a wild-type mouse (38% of the injection in CP) labelled axons in COAp (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 117317884

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SPA (Subparafascicular area) MBA:609 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in SPA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

Made by an adapter reading a database (allen-connectivity@1.3.0).

SSp-bfd (Primary somatosensory area, barrel field) MBA:329 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159602992, an anterograde tracer injected into SSp-bfd of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (100% of the injection in SSp-bfd) labelled axons in BLA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 159602992

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VTA (Ventral tegmental area) MBA:749 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in VTA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to RE (Nucleus of reuniens) MBA:181 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in RE (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PMd (Dorsal premammillary nucleus) MBA:980 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in PMd (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

AAA (Anterior amygdalar area) MBA:23 projects to OT (Olfactory tubercle) MBA:754 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in OT (projection density 0.068).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

VTA (Ventral tegmental area) MBA:749 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 160539283, an anterograde tracer injected into VTA of a Slc6a3-Cre mouse, the tracer Cre-dependent (43% of the injection in VTA) labelled axons in CEA (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 160539283

Made by an adapter reading a database (allen-connectivity@1.3.0).

TR (Postpiriform transition area) MBA:566 projects to NLOT (Nucleus of the lateral olfactory tract) MBA:619 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126653015, an anterograde tracer injected into TR of a wild-type mouse (99% of the injection in TR) labelled axons in NLOT (projection density 0.074).

Allen Mouse Brain Connectivity Atlas, experiment 126653015

Made by an adapter reading a database (allen-connectivity@1.3.0).

ORBvl (Orbital area, ventrolateral part) MBA:746 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167902586, an anterograde tracer injected into ORBvl of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (60% of the injection in ORBvl) labelled axons in BMA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 167902586

Made by an adapter reading a database (allen-connectivity@1.3.0).

SUB (Subiculum) MBA:502 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 288322091, an anterograde tracer injected into SUB of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (43% of the injection in SUB) labelled axons in COAp (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 288322091

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to V (Motor nucleus of trigeminal) MBA:621 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in V (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

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TU (Tuberal nucleus) MBA:614 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264320076, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (15% of the injection in TU) labelled axons in BMA (projection density 0.059).

Allen Mouse Brain Connectivity Atlas, experiment 264320076

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ACB (Nucleus accumbens) MBA:56 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in ACB (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to CLA (Claustrum) MBA:583 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in CLA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVp (Periventricular hypothalamic nucleus, posterior part) MBA:126 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in PVp (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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MEA (Medial amygdalar nucleus) MBA:403 projects to TMv (Tuberomammillary nucleus, ventral part) MBA:1 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in TMv (projection density 0.120).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

CP (Caudoputamen) MBA:672 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120762196, an anterograde tracer injected into CP of a wild-type mouse (54% of the injection in CP) labelled axons in AAA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 120762196

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to LPO (Lateral preoptic area) MBA:226 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272819994, an anterograde tracer injected into MEA of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (94% of the injection in MEA) labelled axons in LPO (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 272819994

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MEA (Medial amygdalar nucleus) MBA:403 projects to P5 (Peritrigeminal zone) MBA:549009215 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in P5 (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PIR (Piriform area) MBA:961 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in PIR (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114472145, an anterograde tracer injected into ENTl of a wild-type mouse (94% of the injection in ENTl) labelled axons in PA (projection density 0.104).

Allen Mouse Brain Connectivity Atlas, experiment 114472145

Made by an adapter reading a database (allen-connectivity@1.3.0).

AAA (Anterior amygdalar area) MBA:23 projects to STN (Subthalamic nucleus) MBA:470 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in STN (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

PMv (Ventral premammillary nucleus) MBA:1004 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286728896, an anterograde tracer injected into PMv of a Th-Cre_FI172 mouse, the tracer Cre-dependent (26% of the injection in PMv) labelled axons in MEA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 286728896

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VISp (Primary visual area) MBA:385 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in VISp (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to RCH (Retrochiasmatic area) MBA:173 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in RCH (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

Made by an adapter reading a database (allen-connectivity@1.3.0).

AAA (Anterior amygdalar area) MBA:23 projects to SMT (Submedial nucleus of the thalamus) MBA:366 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in SMT (projection density 0.048).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to LSr (Lateral septal nucleus, rostral (rostroventral) part) MBA:258 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in LSr (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to CUN (Cuneiform nucleus) MBA:616 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in CUN (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SPA (Subparafascicular area) MBA:609 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in SPA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

Made by an adapter reading a database (allen-connectivity@1.3.0).

LA (Lateral amygdalar nucleus) MBA:131 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126863090, an anterograde tracer injected into LA of a Kcnc2-Cre mouse, the tracer Cre-dependent (39% of the injection in LA) labelled axons in BMA (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 126863090

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267540168, an anterograde tracer injected into VMH of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (56% of the injection in VMH) labelled axons in CEA (projection density 0.122).

Allen Mouse Brain Connectivity Atlas, experiment 267540168

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LHA (Lateral hypothalamic area) MBA:194 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176887774, an anterograde tracer injected into LHA of a Esr1-2A-Cre mouse, the tracer Cre-dependent (23% of the injection in LHA) labelled axons in PA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 176887774

Made by an adapter reading a database (allen-connectivity@1.3.0).

TR (Postpiriform transition area) MBA:566 projects to FS (Fundus of striatum) MBA:998 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126653015, an anterograde tracer injected into TR of a wild-type mouse (99% of the injection in TR) labelled axons in FS (projection density 0.075).

Allen Mouse Brain Connectivity Atlas, experiment 126653015

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to PIR (Piriform area) MBA:961 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in PIR (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to AOB (Accessory olfactory bulb) MBA:151 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in AOB (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).