A mesoscale connectome of the mouse brain

MEA (Medial amygdalar nucleus) MBA:403 projects to NLOT (Nucleus of the lateral olfactory tract) MBA:619 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in NLOT (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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CEA (Central amygdalar nucleus) MBA:536 projects to CL (Central lateral nucleus of the thalamus) MBA:575 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in CL (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

SI (Substantia innominata) MBA:342 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126841788, an anterograde tracer injected into SI of a Chat-IRES-Cre-neo mouse, the tracer Cre-dependent (89% of the injection in SI) labelled axons in BLA (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 126841788

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PF (Parafascicular nucleus) MBA:930 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263785543, an anterograde tracer injected into PF of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (16% of the injection in PF) labelled axons in MEA (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 263785543

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 313325371, an anterograde tracer injected into VMH of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (18% of the injection in VMH) labelled axons in MEA (projection density 0.137).

Allen Mouse Brain Connectivity Atlas, experiment 313325371

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MEA (Medial amygdalar nucleus) MBA:403 projects to PeF (Perifornical nucleus) MBA:576073704 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PeF (projection density 0.110).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301209502, an anterograde tracer injected into PVT of a Efr3a-Cre_NO108 mouse, the tracer Cre-dependent (48% of the injection in PVT) labelled axons in CEA (projection density 0.086).

Allen Mouse Brain Connectivity Atlas, experiment 301209502

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MEA (Medial amygdalar nucleus) MBA:403 projects to SMT (Submedial nucleus of the thalamus) MBA:366 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in SMT (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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ENTl (Entorhinal area, lateral part) MBA:918 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293009265, an anterograde tracer injected into ENTl of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (82% of the injection in ENTl) labelled axons in IA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 293009265

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in AAA (projection density 0.215).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

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SI (Substantia innominata) MBA:342 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159650350, an anterograde tracer injected into SI of a wild-type mouse (38% of the injection in SI) labelled axons in BLA (projection density 0.067).

Allen Mouse Brain Connectivity Atlas, experiment 159650350

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ILA (Infralimbic area) MBA:44 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 283019341, an anterograde tracer injected into ILA of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (42% of the injection in ILA) labelled axons in MEA (projection density 0.063).

Allen Mouse Brain Connectivity Atlas, experiment 283019341

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to LHA (Lateral hypothalamic area) MBA:194 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in LHA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to ASO (Accessory supraoptic group) MBA:332 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in ASO (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

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MS (Medial septal nucleus) MBA:564 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 100141597, an anterograde tracer injected into MS of a wild-type mouse (58% of the injection in MS) labelled axons in TR (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 100141597

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PT (Parataenial nucleus) MBA:15 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305125123, an anterograde tracer injected into PT of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (68% of the injection in PT) labelled axons in LA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 305125123

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CEA (Central amygdalar nucleus) MBA:536 projects to NDB (Diagonal band nucleus) MBA:596 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in NDB (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184259031, an anterograde tracer injected into PIR of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (98% of the injection in PIR) labelled axons in LA (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 184259031

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ORBvl (Orbital area, ventrolateral part) MBA:746 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167902586, an anterograde tracer injected into ORBvl of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (60% of the injection in ORBvl) labelled axons in LA (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 167902586

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PB (Parabrachial nucleus) MBA:867 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 552284594, an anterograde tracer injected into PB of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (67% of the injection in PB) labelled axons in IA (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 552284594

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to EPv (Endopiriform nucleus, ventral part) MBA:966 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305124396, an anterograde tracer injected into MEA of a Gad2-IRES-Cre mouse, the tracer Cre-dependent (65% of the injection in MEA) labelled axons in EPv (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 305124396

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to SBPV (Subparaventricular zone) MBA:347 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in SBPV (projection density 0.060).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 518745840, an anterograde tracer injected into ENTm of a Grp-Cre_KH288 mouse, the tracer Cre-dependent (69% of the injection in ENTm) labelled axons in BLA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 518745840

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PIR (Piriform area) MBA:961 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 300109663, an anterograde tracer injected into PIR of a Drd3-Cre_KI196 mouse, the tracer Cre-dependent (97% of the injection in PIR) labelled axons in BMA (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 300109663

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AId (Agranular insular area, dorsal part) MBA:104 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 262536037, an anterograde tracer injected into AId of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (84% of the injection in AId) labelled axons in COAa (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 262536037

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TU (Tuberal nucleus) MBA:614 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264320076, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (15% of the injection in TU) labelled axons in MEA (projection density 0.097).

Allen Mouse Brain Connectivity Atlas, experiment 264320076

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PIR (Piriform area) MBA:961 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 131068390, an anterograde tracer injected into PIR of a wild-type mouse (95% of the injection in PIR) labelled axons in MEA (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 131068390

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MEA (Medial amygdalar nucleus) MBA:403 projects to TT (Taenia tecta) MBA:589 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in TT (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 287952517, an anterograde tracer injected into ENTl of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (81% of the injection in ENTl) labelled axons in IA (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 287952517

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126116142, an anterograde tracer injected into AHN of a wild-type mouse (32% of the injection in AHN) labelled axons in IA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 126116142

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ENTl (Entorhinal area, lateral part) MBA:918 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127397469, an anterograde tracer injected into ENTl of a wild-type mouse (71% of the injection in ENTl) labelled axons in IA (projection density 0.120).

Allen Mouse Brain Connectivity Atlas, experiment 127397469

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184259031, an anterograde tracer injected into PIR of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (98% of the injection in PIR) labelled axons in CEA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 184259031

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in SO (projection density 0.082).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to BST (Bed nuclei of the stria terminalis) MBA:351 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267150949, an anterograde tracer injected into COAp of a Slc17a7-IRES2-Cre mouse, the tracer Cre-dependent (53% of the injection in COAp) labelled axons in BST (projection density 0.100).

Allen Mouse Brain Connectivity Atlas, experiment 267150949

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PAA (Piriform-amygdalar area) MBA:788 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in PAA (projection density 0.255).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to NLOT (Nucleus of the lateral olfactory tract) MBA:619 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114249084, an anterograde tracer injected into COAp of a wild-type mouse (100% of the injection in COAp) labelled axons in NLOT (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 114249084

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to SI (Substantia innominata) MBA:342 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in SI (projection density 0.132).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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CEA (Central amygdalar nucleus) MBA:536 projects to SLD (Sublaterodorsal nucleus) MBA:358 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in SLD (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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PH (Posterior hypothalamic nucleus) MBA:946 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159649643, an anterograde tracer injected into PH of a wild-type mouse (26% of the injection in PH) labelled axons in PA (projection density 0.062).

Allen Mouse Brain Connectivity Atlas, experiment 159649643

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MEA (Medial amygdalar nucleus) MBA:403 projects to GPi (Globus pallidus, internal segment) MBA:1031 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in GPi (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

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MEA (Medial amygdalar nucleus) MBA:403 projects to MT (Medial terminal nucleus of the accessory optic tract) MBA:58 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in MT (projection density 0.074).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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SSp-bfd (Primary somatosensory area, barrel field) MBA:329 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159602992, an anterograde tracer injected into SSp-bfd of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (100% of the injection in SSp-bfd) labelled axons in LA (projection density 0.056).

Allen Mouse Brain Connectivity Atlas, experiment 159602992

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 478095541, an anterograde tracer injected into VMH of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (28% of the injection in VMH) labelled axons in PA (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 478095541

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181889764, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (55% of the injection in CEA) labelled axons in AAA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 181889764

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 287225747, an anterograde tracer injected into PIR of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (89% of the injection in PIR) labelled axons in CEA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 287225747

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MM (Medial mammillary nucleus) MBA:491 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126710740, an anterograde tracer injected into MM of a wild-type mouse (17% of the injection in MM) labelled axons in IA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 126710740

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VTA (Ventral tegmental area) MBA:749 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127867804, an anterograde tracer injected into VTA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (22% of the injection in VTA) labelled axons in BMA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 127867804

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SUB (Subiculum) MBA:502 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 288322091, an anterograde tracer injected into SUB of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (43% of the injection in SUB) labelled axons in PA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 288322091

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to RT (Reticular nucleus of the thalamus) MBA:262 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in RT (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to ACB (Nucleus accumbens) MBA:56 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267813932, an anterograde tracer injected into BMA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (38% of the injection in BMA) labelled axons in ACB (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 267813932

Made by an adapter reading a database (allen-connectivity@1.3.0).