A mesoscale connectome of the mouse brain

MEA (Medial amygdalar nucleus) MBA:403 projects to PH (Posterior hypothalamic nucleus) MBA:946 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in PH (projection density 0.054).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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PB (Parabrachial nucleus) MBA:867 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 313141786, an anterograde tracer injected into PB of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (71% of the injection in PB) labelled axons in COAa (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 313141786

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ENTl (Entorhinal area, lateral part) MBA:918 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 263974698, an anterograde tracer injected into ENTl of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (96% of the injection in ENTl) labelled axons in LA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 263974698

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TR (Postpiriform transition area) MBA:566 projects to TT (Taenia tecta) MBA:589 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126653015, an anterograde tracer injected into TR of a wild-type mouse (99% of the injection in TR) labelled axons in TT (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 126653015

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MM (Medial mammillary nucleus) MBA:491 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126710740, an anterograde tracer injected into MM of a wild-type mouse (17% of the injection in MM) labelled axons in MEA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 126710740

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182337561, an anterograde tracer injected into VMH of a Nr5a1-Cre mouse, the tracer Cre-dependent (65% of the injection in VMH) labelled axons in CEA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 182337561

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TU (Tuberal nucleus) MBA:614 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176888661, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (40% of the injection in TU) labelled axons in MEA (projection density 0.077).

Allen Mouse Brain Connectivity Atlas, experiment 176888661

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 183225830, an anterograde tracer injected into PVT of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (54% of the injection in PVT) labelled axons in PA (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 183225830

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RE (Nucleus of reuniens) MBA:181 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175019536, an anterograde tracer injected into RE of a wild-type mouse (17% of the injection in RE) labelled axons in BLA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 175019536

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CEA (Central amygdalar nucleus) MBA:536 projects to Pa4 (Paratrochlear nucleus) MBA:606826663 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in Pa4 (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184158996, an anterograde tracer injected into PVT of a Calb2-IRES-Cre mouse, the tracer Cre-dependent (42% of the injection in PVT) labelled axons in CEA (projection density 0.126).

Allen Mouse Brain Connectivity Atlas, experiment 184158996

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PIR (Piriform area) MBA:961 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in PIR (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

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VISC (Visceral area) MBA:677 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180436360, an anterograde tracer injected into VISC of a wild-type mouse (30% of the injection in VISC) labelled axons in BMA (projection density 0.147).

Allen Mouse Brain Connectivity Atlas, experiment 180436360

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CEA (Central amygdalar nucleus) MBA:536 projects to PPN (Pedunculopontine nucleus) MBA:1052 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in PPN (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

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CP (Caudoputamen) MBA:672 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180982124, an anterograde tracer injected into CP of a wild-type mouse (54% of the injection in CP) labelled axons in CEA (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 180982124

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PIR (Piriform area) MBA:961 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 485875903, an anterograde tracer injected into PIR of a Gnb4-IRES2-Cre mouse, the tracer Cre-dependent (55% of the injection in PIR) labelled axons in COAa (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 485875903

Made by an adapter reading a database (allen-connectivity@1.3.0).

RE (Nucleus of reuniens) MBA:181 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184158290, an anterograde tracer injected into RE of a Calb2-IRES-Cre mouse, the tracer Cre-dependent (47% of the injection in RE) labelled axons in CEA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 184158290

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to STN (Subthalamic nucleus) MBA:470 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in STN (projection density 0.109).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VLPO (Ventrolateral preoptic nucleus) MBA:689 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305645132, an anterograde tracer injected into MEA of a Htr3a-Cre_NO152 mouse, the tracer Cre-dependent (40% of the injection in MEA) labelled axons in VLPO (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 305645132

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CEA (Central amygdalar nucleus) MBA:536 projects to SPFp (Subparafascicular nucleus, parvicellular part) MBA:422 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in SPFp (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to TEa (Temporal association areas) MBA:541 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in TEa (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180674463, an anterograde tracer injected into AHN of a wild-type mouse (24% of the injection in AHN) labelled axons in IA (projection density 0.048).

Allen Mouse Brain Connectivity Atlas, experiment 180674463

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MEA (Medial amygdalar nucleus) MBA:403 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305124396, an anterograde tracer injected into MEA of a Gad2-IRES-Cre mouse, the tracer Cre-dependent (65% of the injection in MEA) labelled axons in CEA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 305124396

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ENTl (Entorhinal area, lateral part) MBA:918 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 232311959, an anterograde tracer injected into ENTl of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (76% of the injection in ENTl) labelled axons in PA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 232311959

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AAA (Anterior amygdalar area) MBA:23 projects to ECT (Ectorhinal area) MBA:895 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in ECT (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to NLOT (Nucleus of the lateral olfactory tract) MBA:619 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277710753, an anterograde tracer injected into BLA of a wild-type mouse (49% of the injection in BLA) labelled axons in NLOT (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 277710753

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to EPd (Endopiriform nucleus, dorsal part) MBA:952 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in EPd (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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ProS (Prosubiculum) MBA:484682470 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293701770, an anterograde tracer injected into ProS of a Drd3-Cre_KI196 mouse, the tracer Cre-dependent (53% of the injection in ProS) labelled axons in TR (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 293701770

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MEA (Medial amygdalar nucleus) MBA:403 projects to PD (Posterodorsal preoptic nucleus) MBA:914 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 549805072, an anterograde tracer injected into MEA of a Cart-IRES2-Cre mouse, the tracer Cre-dependent (79% of the injection in MEA) labelled axons in PD (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 549805072

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NLOT (Nucleus of the lateral olfactory tract) MBA:619 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 187269162, an anterograde tracer injected into NLOT of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (32% of the injection in NLOT) labelled axons in TR (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 187269162

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LHA (Lateral hypothalamic area) MBA:194 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860092, an anterograde tracer injected into LHA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (36% of the injection in LHA) labelled axons in AAA (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 170860092

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in TR (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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ENTl (Entorhinal area, lateral part) MBA:918 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 142656218, an anterograde tracer injected into ENTl of a wild-type mouse (50% of the injection in ENTl) labelled axons in CEA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 142656218

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to LM (Lateral mammillary nucleus) MBA:210 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in LM (projection density 0.027).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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ORBm (Orbital area, medial part) MBA:731 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293471629, an anterograde tracer injected into ORBm of a Cux2-IRES-Cre mouse, the tracer Cre-dependent (49% of the injection in ORBm) labelled axons in LA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 293471629

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in TR (projection density 0.081).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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DR (Dorsal nucleus raphe) MBA:872 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114155190, an anterograde tracer injected into DR of a Slc6a4-CreERT2_EZ13 mouse, the tracer Cre-dependent (63% of the injection in DR) labelled axons in CEA (projection density 0.105).

Allen Mouse Brain Connectivity Atlas, experiment 114155190

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CEA (Central amygdalar nucleus) MBA:536 projects to IV (Trochlear nucleus) MBA:115 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in IV (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120282354, an anterograde tracer injected into BLA of a wild-type mouse (22% of the injection in BLA) labelled axons in TR (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 120282354

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MEA (Medial amygdalar nucleus) MBA:403 projects to AM (Anteromedial nucleus) MBA:127 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in AM (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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MEA (Medial amygdalar nucleus) MBA:403 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in MPO (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

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MEA (Medial amygdalar nucleus) MBA:403 projects to PIR (Piriform area) MBA:961 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in PIR (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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VTA (Ventral tegmental area) MBA:749 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165975096, an anterograde tracer injected into VTA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (17% of the injection in VTA) labelled axons in AAA (projection density 0.170).

Allen Mouse Brain Connectivity Atlas, experiment 165975096

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CEA (Central amygdalar nucleus) MBA:536 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in BMA (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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SI (Substantia innominata) MBA:342 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 549362997, an anterograde tracer injected into SI of a Oxtr-T2A-Cre mouse, the tracer Cre-dependent (30% of the injection in SI) labelled axons in TR (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 549362997

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MEA (Medial amygdalar nucleus) MBA:403 projects to PSTN (Parasubthalamic nucleus) MBA:364 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in PSTN (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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ORBl (Orbital area, lateral part) MBA:723 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112306316, an anterograde tracer injected into ORBl of a wild-type mouse (83% of the injection in ORBl) labelled axons in AAA (projection density 0.078).

Allen Mouse Brain Connectivity Atlas, experiment 112306316

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CP (Caudoputamen) MBA:672 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272824561, an anterograde tracer injected into CP of a wild-type mouse (52% of the injection in CP) labelled axons in AAA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 272824561

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to VISC (Visceral area) MBA:677 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in VISC (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 301264977, an anterograde tracer injected into ENTl of a Gpr26-Cre_KO250 mouse, the tracer Cre-dependent (62% of the injection in ENTl) labelled axons in IA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 301264977

Made by an adapter reading a database (allen-connectivity@1.3.0).