A mesoscale connectome of the mouse brain

LHA (Lateral hypothalamic area) MBA:194 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165035106, an anterograde tracer injected into LHA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (43% of the injection in LHA) labelled axons in MEA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 165035106

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267928135, an anterograde tracer injected into AHN of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (28% of the injection in AHN) labelled axons in PA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 267928135

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MEA (Medial amygdalar nucleus) MBA:403 projects to ENTl (Entorhinal area, lateral part) MBA:918 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in ENTl (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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AAA (Anterior amygdalar area) MBA:23 projects to PR (Perireunensis nucleus) MBA:1077 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in PR (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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AIv (Agranular insular area, ventral part) MBA:119 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 513773998, an anterograde tracer injected into AIv of a Ntng2-IRES2-Cre mouse, the tracer Cre-dependent (43% of the injection in AIv) labelled axons in COAp (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 513773998

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CEA (Central amygdalar nucleus) MBA:536 projects to DMX (Dorsal motor nucleus of the vagus nerve) MBA:839 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in DMX (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

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CEA (Central amygdalar nucleus) MBA:536 projects to LT (Lateral terminal nucleus of the accessory optic tract) MBA:66 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in LT (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in BA (projection density 0.219).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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CEA (Central amygdalar nucleus) MBA:536 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in IA (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SNr (Substantia nigra, reticular part) MBA:381 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in SNr (projection density 0.025).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to Acs5 (Accessory trigeminal nucleus) MBA:549009219 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in Acs5 (projection density 0.075).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to VTA (Ventral tegmental area) MBA:749 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 241279261, an anterograde tracer injected into CEA of a Tac2-IRES2-Cre mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in VTA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 241279261

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CEA (Central amygdalar nucleus) MBA:536 projects to PST (Preparasubthalamic nucleus) MBA:356 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181889764, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (55% of the injection in CEA) labelled axons in PST (projection density 0.059).

Allen Mouse Brain Connectivity Atlas, experiment 181889764

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PB (Parabrachial nucleus) MBA:867 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 313141786, an anterograde tracer injected into PB of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (71% of the injection in PB) labelled axons in BMA (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 313141786

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RE (Nucleus of reuniens) MBA:181 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175374982, an anterograde tracer injected into RE of a wild-type mouse (64% of the injection in RE) labelled axons in LA (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 175374982

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CEA (Central amygdalar nucleus) MBA:536 projects to MT (Medial terminal nucleus of the accessory optic tract) MBA:58 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in MT (projection density 0.048).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in PIL (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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ECT (Ectorhinal area) MBA:895 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180435652, an anterograde tracer injected into ECT of a wild-type mouse (38% of the injection in ECT) labelled axons in COAa (projection density 0.072).

Allen Mouse Brain Connectivity Atlas, experiment 180435652

Made by an adapter reading a database (allen-connectivity@1.3.0).

LHA (Lateral hypothalamic area) MBA:194 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113313632, an anterograde tracer injected into LHA of a wild-type mouse (20% of the injection in LHA) labelled axons in AAA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 113313632

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PIR (Piriform area) MBA:961 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 310439724, an anterograde tracer injected into PIR of a Cux2-CreERT2 mouse, the tracer Cre-dependent (72% of the injection in PIR) labelled axons in TR (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 310439724

Made by an adapter reading a database (allen-connectivity@1.3.0).

AHN (Anterior hypothalamic nucleus) MBA:88 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267928135, an anterograde tracer injected into AHN of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (28% of the injection in AHN) labelled axons in MEA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 267928135

Made by an adapter reading a database (allen-connectivity@1.3.0).

TU (Tuberal nucleus) MBA:614 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264248605, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (36% of the injection in TU) labelled axons in COAa (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 264248605

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 131068390, an anterograde tracer injected into PIR of a wild-type mouse (95% of the injection in PIR) labelled axons in AAA (projection density 0.176).

Allen Mouse Brain Connectivity Atlas, experiment 131068390

Made by an adapter reading a database (allen-connectivity@1.3.0).

RE (Nucleus of reuniens) MBA:181 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 310976160, an anterograde tracer injected into RE of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (35% of the injection in RE) labelled axons in IA (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 310976160

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to Xi (Xiphoid thalamic nucleus) MBA:560581559 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in Xi (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

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PIR (Piriform area) MBA:961 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 506117918, an anterograde tracer injected into PIR of a Gpr26-Cre_KO250 mouse, the tracer Cre-dependent (87% of the injection in PIR) labelled axons in AAA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 506117918

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278510903, an anterograde tracer injected into PVT of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (51% of the injection in PVT) labelled axons in IA (projection density 0.186).

Allen Mouse Brain Connectivity Atlas, experiment 278510903

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CEA (Central amygdalar nucleus) MBA:536 projects to VMH (Ventromedial hypothalamic nucleus) MBA:693 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in VMH (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in AAA (projection density 0.090).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SLD (Sublaterodorsal nucleus) MBA:358 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in SLD (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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SI (Substantia innominata) MBA:342 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 298835152, an anterograde tracer injected into SI of a Efr3a-Cre_NO108 mouse, the tracer Cre-dependent (93% of the injection in SI) labelled axons in AAA (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 298835152

Made by an adapter reading a database (allen-connectivity@1.3.0).

LP (Lateral posterior nucleus of the thalamus) MBA:218 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146658879, an anterograde tracer injected into LP of a wild-type mouse (23% of the injection in LP) labelled axons in LA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 146658879

Made by an adapter reading a database (allen-connectivity@1.3.0).

PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 298050269, an anterograde tracer injected into PVT of a Lypd6-Cre_KL156 mouse, the tracer Cre-dependent (45% of the injection in PVT) labelled axons in BMA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 298050269

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CEA (Central amygdalar nucleus) MBA:536 projects to TU (Tuberal nucleus) MBA:614 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in TU (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VMH (Ventromedial hypothalamic nucleus) MBA:693 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in VMH (projection density 0.145).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

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ACB (Nucleus accumbens) MBA:56 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146470726, an anterograde tracer injected into ACB of a wild-type mouse (19% of the injection in ACB) labelled axons in BLA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 146470726

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AAA (Anterior amygdalar area) MBA:23 projects to RPO (Nucleus raphe pontis) MBA:238 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in RPO (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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NLOT (Nucleus of the lateral olfactory tract) MBA:619 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 294174996, an anterograde tracer injected into NLOT of a Slc17a6-IRES-Cre mouse, the tracer Cre-dependent (97% of the injection in NLOT) labelled axons in BLA (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 294174996

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CEA (Central amygdalar nucleus) MBA:536 projects to V (Motor nucleus of trigeminal) MBA:621 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in V (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to RH (Rhomboid nucleus) MBA:189 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in RH (projection density 0.067).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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ENTl (Entorhinal area, lateral part) MBA:918 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 642967852, an anterograde tracer injected into ENTl of a wild-type mouse (98% of the injection in ENTl) labelled axons in AAA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 642967852

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to SO (Supraoptic nucleus) MBA:390 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 305321177, an anterograde tracer injected into BLA of a Slc32a1-IRES-Cre mouse, the tracer Cre-dependent (37% of the injection in BLA) labelled axons in SO (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 305321177

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AHN (Anterior hypothalamic nucleus) MBA:88 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181057754, an anterograde tracer injected into AHN of a wild-type mouse (24% of the injection in AHN) labelled axons in LA (projection density 0.073).

Allen Mouse Brain Connectivity Atlas, experiment 181057754

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ZI (Zona incerta) MBA:797 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126190743, an anterograde tracer injected into ZI of a wild-type mouse (45% of the injection in ZI) labelled axons in CEA (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 126190743

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PH (Posterior hypothalamic nucleus) MBA:946 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159649643, an anterograde tracer injected into PH of a wild-type mouse (26% of the injection in PH) labelled axons in IA (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 159649643

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VTA (Ventral tegmental area) MBA:749 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127651139, an anterograde tracer injected into VTA of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (27% of the injection in VTA) labelled axons in PA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 127651139

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MM (Medial mammillary nucleus) MBA:491 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127396760, an anterograde tracer injected into MM of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (44% of the injection in MM) labelled axons in AAA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 127396760

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VISrl (Rostrolateral visual area) MBA:417 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in VISrl (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

BLA (Basolateral amygdalar nucleus) MBA:295 projects to AIv (Agranular insular area, ventral part) MBA:119 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in AIv (projection density 0.132).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to VTA (Ventral tegmental area) MBA:749 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in VTA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).